Browse Element(s) Details


Os.25449.1.S1_at

Description gb:AK108531.1
DB_XREF= gi:32993740
TID=Os.25449.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25449 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-C03, full insert sequence.
FL= gb:AK108531.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2423011/11folate/biopterin transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g24200OsAffx.16393.1.S1_at11/117+13766562..13767023hypothetical protein
LOC_Os07g24210OsAffx.5428.1.S1_x_at11/117+13768306..13768908hypothetical protein
LOC_Os07g24220OsAffx.28565.1.S1_at11/117+13769736..13770131hypothetical protein
LOC_Os07g24230Os.25449.1.S1_at11/117+13775173..13778645folate/biopterin transporter family protein, expressed
LOC_Os07g24240NANA7+13782661..13784301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g24250NANA7+13789202..13790955retrotransposon protein, putative, unclassified
LOC_Os07g24260Os.23706.1.A1_x_at1/117+13791292..13793257retrotransposon protein, putative, unclassified
LOC_Os07g24270NANA7+13794323..13794547retrotransposon protein, putative, unclassified
LOC_Os07g24280Os.40360.1.S1_x_at1/117+13797695..13801220hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0008517molecular_functionfolic acid transporter activity
GO:0015231molecular_function5-formyltetrahydrofolate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25449.1.S1_at--240--131Chr07:13775740..13775764 (25 bp)
ATTCAAGGTCTTGCCATTCTCAGTT
LOC_Os07g24230
Os.25449.1.S1_at--143--1231Chr07:13775719..13775743 (25 bp)
AGTTCTGTTGTCAAGCCAATGCCCA
LOC_Os07g24230
Os.25449.1.S1_at--388--8691Chr07:13775688..13775712 (25 bp)
TGTGAAGGTTCGCTTTTCGCTTTCT
LOC_Os07g24230
Os.25449.1.S1_at--995--10631Chr07:13775673..13775697 (25 bp)
TTCGCTTTCTTCACATCTGGACTGG
LOC_Os07g24230
Os.25449.1.S1_at--187--7671Chr07:13775582..13775606 (25 bp)
GGGATTACACAAGCTTCCCTTTGTG
LOC_Os07g24230
Os.25449.1.S1_at--95--3651Chr07:13775569..13775593 (25 bp)
CTTCCCTTTGTGTATTTTGCTGCAA
LOC_Os07g24230
Os.25449.1.S1_at--420--1191Chr07:13775544..13775568 (25 bp)
AGTTTGGCAGCATTGGTACCTTTGG
LOC_Os07g24230
Os.25449.1.S1_at--142--8011Chr07:13775520..13775544 (25 bp)
GGATGGATATCCTTTCTACCTGAAA
LOC_Os07g24230
Os.25449.1.S1_at--230--7051Chr07:13775435..13775459 (25 bp)
GTAAACCACACAACCTCGAGATGTT
LOC_Os07g24230
Os.25449.1.S1_at--609--6731Chr07:13775341..13775365 (25 bp)
GTTCTAGTTCTAACGTTCCAGCTGA
LOC_Os07g24230
Os.25449.1.S1_at--220--3611Chr07:13775279..13775303 (25 bp)
CATTGTGTTCAGCTTATCATGCCTG
LOC_Os07g24230
Target Sequence 
ATTCAAGGTCTTGCCATTCTCAGTTCTGTTGTCAAGCCAATGCCCACCTGGCTGTGAAGGTTCGCTTTTCGCTTTCTTCA
CATCTGGACTGGTGTTTTCAGCAATAGTAAGCGGAGTATTTGGAGTTGGGTTGTCCAGTTTAATTGGGGTGTCTGGTGGG
GATTACACAAGCTTCCCTTTGTGTATTTTGCTGCAAAGTTTGGCAGCATTGGTACCTTTGGGATGGATATCCTTTCTACC
TGAAAAATGGACTGCCGACGACAAGATTCTTAAACCAAGATGAGGCAACCCTGTAGGGTCAATAGGTAAACCACACAACC
TCGAGATGTTAGTAGGTAATGACAGTGTAGAGGGTTACATGTATAGATACGAAGATGTCATTTTTCTTTGGAATCAATAG
TTCTAGTTCTAACGTTCCAGCTGAATATTGGCATCAAATTGTATTCTCTTGCTTCCAAGAGCATTGTGTTCAGCTTATCA
TGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis