Browse Element(s) Details


OsAffx.5428.1.S1_x_at

Description tigr:9635.m02313
TID=OsAffx.5428.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2421011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g24190Os.10178.1.S1_a_at11/117+13739849..13745511cellulose synthase A catalytic subunit 10, putative, expressed
LOC_Os07g24190Os.10178.2.S1_a_at11/117+13739849..13745511cellulose synthase A catalytic subunit 10, putative, expressed
LOC_Os07g24200OsAffx.16393.1.S1_at11/117+13766562..13767023hypothetical protein
LOC_Os07g24210OsAffx.5428.1.S1_x_at11/117+13768306..13768908hypothetical protein
LOC_Os07g24220OsAffx.28565.1.S1_at11/117+13769736..13770131hypothetical protein
LOC_Os07g24230Os.25449.1.S1_at11/117+13775173..13778645folate/biopterin transporter family protein, expressed
LOC_Os07g24240NANA7+13782661..13784301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g24250NANA7+13789202..13790955retrotransposon protein, putative, unclassified
LOC_Os07g24260Os.23706.1.A1_x_at1/117+13791292..13793257retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5428.1.S1_x_at--545--3773Chr06:8642614..8642634 (21 bp)
CTCTGGCTTTGTCGCAGATTCTACA
NONE
OsAffx.5428.1.S1_x_at--913--3913Chr06:8642614..8642636 (23 bp)
CTGGCTTTGTCGCAGATTCTACAAC
NONE
OsAffx.5428.1.S1_x_at--706--8492Chr06:8642614..8642637 (24 bp)
TGGCTTTGTCGCAGATTCTACAACT
NONE
OsAffx.5428.1.S1_x_at--749--4112Chr06:8642622..8642646 (25 bp)
CGCAGATTCTACAACTACTCGATTA
NONE
OsAffx.5428.1.S1_x_at--371--10291Chr07:13768377..13768401 (25 bp)
TTGGACAACTACTCAATTACTCGAG
LOC_Os07g24210
OsAffx.5428.1.S1_x_at--789--5951Chr07:13768355..13768379 (25 bp)
GAGAACGGTTGGACAACTACTCAAT
LOC_Os07g24210
OsAffx.5428.1.S1_x_at--213--1931Chr07:13768351..13768375 (25 bp)
ACGGTTGGACAACTACTCAATTACT
LOC_Os07g24210
OsAffx.5428.1.S1_x_at--1127--7911Chr07:13768349..13768373 (25 bp)
GGTTGGACAACTACTCAATTACTCG
LOC_Os07g24210
OsAffx.5428.1.S1_x_at--724--8491Chr07:13768346..13768370 (25 bp)
TGGACAACTACTCAATTACTCGAAA
LOC_Os07g24210
OsAffx.5428.1.S1_x_at--1071--5611Chr07:13768344..13768368 (25 bp)
GACAACTACTCAATTACTCGAAAAC
LOC_Os07g24210
OsAffx.5428.1.S1_x_at--381--3731Chr07:13768336..13768360 (25 bp)
CTCAATTACTCGAAAACAGTTGGTG
LOC_Os07g24210
Target Sequence 
CTCTGGCTTTGTCGCAGATTCTACAACTACTCGATTACTCGAGAACGGTTGGACAACTACTCAATTACTCGAGAACGGTT
GGACAACTACTCAATTACTCGAAAACAGTTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5428.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis