Browse Element(s) Details


Os.10178.1.S1_a_at

Description gb:AK120236.1
DB_XREF= gi:37989859
TID=Os.10178.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10178 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043M21, full insert sequence.
FL= gb:AK073561.1 gb:AK121193.1 gb:AK120236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2419011/11cellulose synthase A catalytic subunit 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g24160OsAffx.28564.1.S1_at11/117+13725317..13725676expressed protein
LOC_Os07g24160OsAffx.28564.1.S1_x_at11/117+13725317..13725676expressed protein
LOC_Os07g24170OsAffx.16391.1.S1_at11/117+13726984..13727688hypothetical protein
LOC_Os07g24180OsAffx.16392.1.S1_x_at10/117+13736603..13737417hypothetical protein
LOC_Os07g24190Os.10178.1.S1_a_at11/117+13739849..13745511cellulose synthase A catalytic subunit 10, putative, expressed
LOC_Os07g24190Os.10178.2.S1_a_at11/117+13739849..13745511cellulose synthase A catalytic subunit 10, putative, expressed
LOC_Os07g24200OsAffx.16393.1.S1_at11/117+13766562..13767023hypothetical protein
LOC_Os07g24210OsAffx.5428.1.S1_x_at11/117+13768306..13768908hypothetical protein
LOC_Os07g24220OsAffx.28565.1.S1_at11/117+13769736..13770131hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009833biological_processprimary cell wall biosynthesis (sensu Magnoliophyta)
GO:0030244biological_processcellulose biosynthesis
GO:0005886cellular_componentplasma membrane
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10178.1.S1_a_at--708--2431Chr07:13741865..13741889 (25 bp)
AAAATCAATCCCCTGCATATGCACT
LOC_Os07g24190
Os.10178.1.S1_a_at--471--551Chr07:13741858..13741882 (25 bp)
ATCCCCTGCATATGCACTTGGTGAA
LOC_Os07g24190
Os.10178.1.S1_a_at--317--4711Chr07:13741682..13741706 (25 bp)
GCTGGAAAAGAAATTTGGCCAATCT
LOC_Os07g24190
Os.10178.1.S1_a_at--716--8451Chr07:13741667..13741691 (25 bp)
TGGCCAATCTTCTGTTTTTGTCGCA
LOC_Os07g24190
Os.10178.1.S1_a_at--454--10611Chr07:13741658..13741682 (25 bp)
TTCTGTTTTTGTCGCATCCACACTT
LOC_Os07g24190
Os.10178.1.S1_a_at--810--2951Chr07:13741627..13741651 (25 bp)
AATGGTGGAACCTTGAAAAGTGCGA
LOC_Os07g24190
Os.10178.1.S1_a_at--597--5511Chr07:13741613..13741637 (25 bp)
GAAAAGTGCGAGTCCAGCATCTCTT
LOC_Os07g24190
Os.10178.1.S1_a_at--568--6111Chr07:13741604..13741628 (25 bp)
GAGTCCAGCATCTCTTCTAAAGGAA
LOC_Os07g24190
Os.10178.1.S1_a_at--205--131Chr07:13741576..13741600 (25 bp)
ATTCATGTCATAAGCTGTGGGTACG
LOC_Os07g24190
Os.10178.1.S1_a_at--344--3571Chr07:13741361..13741385 (25 bp)
CATACCTAAACTACCTGCATTCAAA
LOC_Os07g24190
Os.10178.1.S1_a_at--1059--7171Chr07:13741277..13741301 (25 bp)
GTCTGTTGAAATATTCTTCAGCAAC
LOC_Os07g24190
Target Sequence 
AAAATCAATCCCCTGCATATGCACTTGGTGAAATTGAGGAGGGTGCTCCAGGAGCTGAAAATGAAAAGGCTGGTATTGTA
AATCAACAGAAGCTGGAAAAGAAATTTGGCCAATCTTCTGTTTTTGTCGCATCCACACTTCTTGAGAATGGTGGAACCTT
GAAAAGTGCGAGTCCAGCATCTCTTCTAAAGGAAGCAATTCATGTCATAAGCTGTGGGTACGAAGATAAGACAGACTGGG
GGAAAGAGATTGGCTGGATCTACGGATCAGTTACAGAAGATATTCTAACTGGTTTTAAGATGCACTGCCATGGTTGGCGG
TCAATTTACTGCATACCTAAACTACCTGCATTCAAAGGTTCTGCACCACTCAATCTTTCTGATCGTCTTCACCAAGTTCT
TCGGTGGGCTCTTGGGTCTGTTGAAATATTCTTCAGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10178.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis