Browse Element(s) Details


OsAffx.28564.1.S1_at

Description tigr:9635.m02307
TID=OsAffx.28564.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2416011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g24150OsAffx.16391.1.S1_at11/117+13705553..13706269hypothetical protein
LOC_Os07g24160OsAffx.28564.1.S1_at11/117+13725317..13725676expressed protein
LOC_Os07g24160OsAffx.28564.1.S1_x_at11/117+13725317..13725676expressed protein
LOC_Os07g24170OsAffx.16391.1.S1_at11/117+13726984..13727688hypothetical protein
LOC_Os07g24180OsAffx.16392.1.S1_x_at10/117+13736603..13737417hypothetical protein
LOC_Os07g24190Os.10178.1.S1_a_at11/117+13739849..13745511cellulose synthase A catalytic subunit 10, putative, expressed
LOC_Os07g24190Os.10178.2.S1_a_at11/117+13739849..13745511cellulose synthase A catalytic subunit 10, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28564.1.S1_at--466--4292Chr11:21232989..21233013 (25 bp)
CCTCCTGGTTGCGAGCGGCTGCGAT
NONE
OsAffx.28564.1.S1_at--1047--9272Chr11:21232991..21233015 (25 bp)
TCCTGGTTGCGAGCGGCTGCGATCC
NONE
OsAffx.28564.1.S1_at--248--8331Chr07:13725576..13725600 (25 bp)
GGCTGCGATCCTGCGCCCTGCGACG
LOC_Os07g24160
OsAffx.28564.1.S1_at--685--9571Chr07:13725499..13725523 (25 bp)
TCTTCGATCCGGCAACTTGGCATCT
LOC_Os07g24160
OsAffx.28564.1.S1_at--576--10631Chr07:13725497..13725521 (25 bp)
TTCGATCCGGCAACTTGGCATCTCG
LOC_Os07g24160
OsAffx.28564.1.S1_at--217--9391Chr07:13725496..13725520 (25 bp)
TCGATCCGGCAACTTGGCATCTCGG
LOC_Os07g24160
OsAffx.28564.1.S1_at--921--6371Chr07:13725494..13725518 (25 bp)
GATCCGGCAACTTGGCATCTCGGCG
LOC_Os07g24160
OsAffx.28564.1.S1_at--22--571Chr07:13725493..13725517 (25 bp)
ATCCGGCAACTTGGCATCTCGGCGA
LOC_Os07g24160
OsAffx.28564.1.S1_at--553--3952Chr11:21232982..21233123 (25 bp)
CGGCAACTTGGCATCTCGGCGACAG
NONE
OsAffx.28564.1.S1_at--1147--3251Chr07:13725487..13725511 (25 bp)
CAACTTGGCATCTCGGCGACAGGGT
LOC_Os07g24160
OsAffx.28564.1.S1_at--1147--2472Chr11:21233104..21233127 (24 bp)
AACTTGGCATCTCGGCGACAGGGTT
NONE
Target Sequence 
CCTCCTGGTTGCGAGCGGCTGCGATCCTGCGCCCTGCGACGCCCCTCCTGCCCCGAGCCCCCGACGCCCCTCCAGTCCTC
GCTGTGCCTCCCCTCTTCGATCCGGCAACTTGGCATCTCGGCGACAGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis