Browse Element(s) Details


OsAffx.16392.1.S1_x_at

Description tigr:9635.m02309
TID=OsAffx.16392.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2418010/11hypothetical protein
LOC_Os07g241303/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g24160OsAffx.28564.1.S1_at11/117+13725317..13725676expressed protein
LOC_Os07g24160OsAffx.28564.1.S1_x_at11/117+13725317..13725676expressed protein
LOC_Os07g24170OsAffx.16391.1.S1_at11/117+13726984..13727688hypothetical protein
LOC_Os07g24180OsAffx.16392.1.S1_x_at10/117+13736603..13737417hypothetical protein
LOC_Os07g24190Os.10178.1.S1_a_at11/117+13739849..13745511cellulose synthase A catalytic subunit 10, putative, expressed
LOC_Os07g24190Os.10178.2.S1_a_at11/117+13739849..13745511cellulose synthase A catalytic subunit 10, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16392.1.S1_x_at--381--1231NONE
TGGTTGGAAAGGAGATGAAAGTTAC
NONE
OsAffx.16392.1.S1_x_at--198--3071Chr07:13737320..13737344 (25 bp)
AATCTAGTGCTTTAGTTTCTCCTTC
LOC_Os07g24180
OsAffx.16392.1.S1_x_at--360--10311Chr07:13737335..13737359 (25 bp)
TTTCTCCTTCGACTTATTATGTTGA
LOC_Os07g24180
OsAffx.16392.1.S1_x_at--959--10591Chr07:13737336..13737360 (25 bp)
TTCTCCTTCGACTTATTATGTTGAT
LOC_Os07g24180
OsAffx.16392.1.S1_x_at--1016--9491Chr07:13737337..13737361 (25 bp)
TCTCCTTCGACTTATTATGTTGATG
LOC_Os07g24180
OsAffx.16392.1.S1_x_at--580--3811Chr07:13737338..13737362 (25 bp)
CTCCTTCGACTTATTATGTTGATGG
LOC_Os07g24180
OsAffx.16392.1.S1_x_at--625--9351Chr07:13737343..13737367 (25 bp)
TCGACTTATTATGTTGATGGCTCTT
LOC_Os07g24180
OsAffx.16392.1.S1_x_at--861--8811Chr07:13737354..13737378 (25 bp)
TGTTGATGGCTCTTCTACATCGACC
LOC_Os07g24180
OsAffx.16392.1.S1_x_at--477--10772Chr07:13737356..13737380 (25 bp)
TTGATGGCTCTTCTACATCGACCTT
LOC_Os07g24180
OsAffx.16392.1.S1_x_at--886--852Chr07:13737359..13737383 (25 bp)
ATGGCTCTTCTACATCGACCTTTAC
LOC_Os07g24180
OsAffx.16392.1.S1_x_at--300--4812Chr07:13737362..13737386 (25 bp)
GCTCTTCTACATCGACCTTTACTGC
LOC_Os07g24180
Target Sequence 
TGGTTGGAAAGGAGATGAAAGTTACATCTATTCAGGAATCTGTTGATATGTCCACTTTGACTTTAGATTCACTTTACACT
AAACTAAAAACTGATGAGATGAATATTCTTTCTCGTAAAGTTGATTCTAAATCTAGTGCTTTAGTTTCTCCTTCGACTTA
TTATGTTGATGGCTCTTCTACATCGACCTTTACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16392.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis