Browse Element(s) Details


Os.25589.3.S1_x_at

Description gb:CB665110
DB_XREF= gi:29668835
DB_XREF=OSJNEd11E04.f
CLONE=OSJNEd11E04
TID=Os.25589.3
CNT=15
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25589 (NCBI UniGene Cluster)
UG_TITLE=Susceptibility antioxidant protein (RREO) mRNA, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2580011/11PB1 domain containing protein, expressed
LOC_Os11g257804/11PB1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25760OsAffx.19021.1.S1_at11/1111+14191792..14192577hypothetical protein
LOC_Os11g25770OsAffx.31138.1.S1_x_at10/1111+14194853..14196622hypothetical protein
LOC_Os11g25780Os.25589.1.S1_at11/1111+14204976..14206065PB1 domain containing protein, expressed
LOC_Os11g25780Os.25589.3.S1_x_at4/1111+14204976..14206065PB1 domain containing protein, expressed
LOC_Os11g25790NANA11+14207021..14207275hypothetical protein
LOC_Os11g25800Os.25589.3.S1_x_at11/1111+14212973..14214293PB1 domain containing protein, expressed
LOC_Os11g25800Os.25589.3.S1_at11/1111+14212973..14214293PB1 domain containing protein, expressed
LOC_Os11g25810NANA11+14218586..14221617retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g25820NANA11+14225783..14226127hypothetical protein
LOC_Os11g25830NANA11+14226948..14228538retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25840NANA11+14231266..14231787hypothetical protein
LOC_Os11g25850NANA11+14232610..14235100transposon protein, putative, unclassified
LOC_Os11g25860Os.18316.1.S1_at11/1111+14237401..14240211protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25589.3.S1_x_at--252--9272Chr11:14213346..14213462 (25 bp)
TCCCTTTCCACGAGTTGCAACGGAA
LOC_Os11g25800
Os.25589.3.S1_x_at--441--1932Chr11:14213515..14213539 (25 bp)
ACGGAGGACCTGGACGCGCTCGTCT
LOC_Os11g25800
Os.25589.3.S1_x_at--144--1752Chr11:14213558..14213582 (25 bp)
ACCTCGCCAACCTGCTGGAGGAGTA
LOC_Os11g25800
Os.25589.3.S1_x_at--985--6691Chr11:14213628..14213652 (25 bp)
GTTCCTGTTCCCAAGGACGACGACA
LOC_Os11g25800
Os.25589.3.S1_x_at--138--591Chr11:14213687..14213711 (25 bp)
ATGCCCTGTACCACCGTCAGACTGG
LOC_Os11g25800
Os.25589.3.S1_x_at--828--7571Chr11:14213738..14213762 (25 bp)
GGGCGGCGCATCAGATGTCGTCTCC
LOC_Os11g25800
Os.25589.3.S1_x_at--293--7832Chr11:14213828..14213852 (25 bp)
GGTACCTAGTCCAGAGTGCCAGCCA
LOC_Os11g25800
Os.25589.3.S1_x_at--134--9211Chr11:14213844..14213868 (25 bp)
TGCCAGCCACTGGTAATAGCGATCA
LOC_Os11g25800
Os.25589.3.S1_x_at--740--5931Chr11:14213873..14213897 (25 bp)
GAGAACCGGGCGTGGTCTAGTATCT
LOC_Os11g25800
Os.25589.3.S1_x_at--420--7471Chr11:14213884..14213908 (25 bp)
GTGGTCTAGTATCTGCCTACGTAAC
LOC_Os11g25800
Os.25589.3.S1_x_at--568--9751Chr11:14213905..14213929 (25 bp)
TAACCCTGCTCTGTACGTAGTAATA
LOC_Os11g25800
Target Sequence 
TCCCTTTCCACGAGTTGCAACGGAAGCTGAGGGAGATGTGCGGGTGGGAGGCGGTGTGCCTGCGGTGCCAGCTCCCGACG
GAGGACCTGGACGCGCTCGTCTCCGTCACCGGCGACGACGACCTCGCCAACCTGCTGGAGGAGTACGACGCGGCCAGCCG
GGACCGCCTCCAGCCGCTCAAGATCCGGGCGTTCCTGTTCCCAAGGACGACGACAACGACACCGCCGCCGCCGTCCAGGA
CGGTACCCCATGCCCTGTACCACCGTCAGACTGGCAGCGCGCCGTCGTGCGCATCCCGGTGGGCGGCGCATCAGATGTCG
TCTCCTCCCGCTCGTGTTCTGCACCAGCAGCAGCATCACAACCGGCACAGCGGCGAGGCGCGGCCGCACCGGTACCTAGT
CCAGAGTGCCAGCCACTGGTAATAGCGATCAGATTGAGAACCGGGCGTGGTCTAGTATCTGCCTACGTAACCCTGCTCTG
TACGTAGTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25589.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis