Browse Element(s) Details


Os.25599.1.A1_at

Description gb:AK099722.1
DB_XREF= gi:32984931
TID=Os.25599.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25599 (NCBI UniGene Cluster)
UG_TITLE=Clone Osch65 putative CONSTANS-like B-box zinc finger protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088K05, full insert sequence.
FL= gb:AK099722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4244010/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42400Os.11141.1.S1_at11/118+26633973..26637492No apical meristem protein, expressed
LOC_Os08g42410Os.18710.1.S1_at10/118+26645139..26650451Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os08g42420Os.9624.1.S1_a_at11/118+26652840..26658222expressed protein
LOC_Os08g42430OsAffx.17475.1.S1_at10/118+26658996..26659680plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os08g42440Os.25599.1.A1_at10/118+26659995..26664271CCT motif family protein, expressed
LOC_Os08g42450Os.36874.1.S1_at10/118+26687239..26689248expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25599.1.A1_at--1067--9351Chr08:26660424..26660448 (25 bp)
TCGAACGGAGCACCTGATGATGTCA
LOC_Os08g42440
Os.25599.1.A1_at--1043--1471Chr08:26660400..26660424 (25 bp)
AGCAATGGCGGGTGATCTCATCCCT
LOC_Os08g42440
Os.25599.1.A1_at--500--5191Chr08:26660375..26660399 (25 bp)
GCAATCCCTGATAGCTAGCTGCAAT
LOC_Os08g42440
Os.25599.1.A1_at--521--9991Chr08:26660360..26660384 (25 bp)
TAGCTGCAATGTACGTAGCCTGGCT
LOC_Os08g42440
Os.25599.1.A1_at--824--9991Chr08:26660345..26660369 (25 bp)
TAGCCTGGCTTTTTGACGTTGCAGA
LOC_Os08g42440
Os.25599.1.A1_at--583--1891Chr08:26660330..26660354 (25 bp)
ACGTTGCAGAGATCGATGTGGCCAT
LOC_Os08g42440
Os.25599.1.A1_at--1041--8811Chr08:26660268..26660292 (25 bp)
TGTTGTTACAACCTATGCACGCTCT
LOC_Os08g42440
Os.25599.1.A1_at--791--9031Chr08:26660253..26660277 (25 bp)
TGCACGCTCTGCTTAAGTCTGTCTG
LOC_Os08g42440
Os.25599.1.A1_at--507--2851Chr08:26660239..26660263 (25 bp)
AAGTCTGTCTGCTGCTGCATGTATT
LOC_Os08g42440
Os.25599.1.A1_at--1105--171Chr08:26660203..26660227 (25 bp)
ATTTTTGCGTCCAAGAGTCGATCTT
LOC_Os08g42440
Os.25599.1.A1_at--843--9231NONE
TCCATGCATAAATCTTTCCCGGCAA
NONE
Target Sequence 
TCGAACGGAGCACCTGATGATGTCAGCAATGGCGGGTGATCTCATCCCTGCAATCCCTGATAGCTAGCTGCAATGTACGT
AGCCTGGCTTTTTGACGTTGCAGAGATCGATGTGGCCATATATATGCTGAGAGCTAAGTCTGAAATATGTTGCGTATGTT
GTTACAACCTATGCACGCTCTGCTTAAGTCTGTCTGCTGCTGCATGTATTGTTCAGCTAAAATTTTTGCGTCCAAGAGTC
GATCTTGATAATTAAGTACCCCTACTACAAATCTACACTACATACTGTAATAGANCCTTAGATTTTTTTTCTCATCTCCT
CGTAGAAATATATGGCATTTTATATATNCGTAAATATGCACAAATAGCCNCATTAATTATATATATGCACGAGATCATNC
TGANNNTATGTTTCAGTCTGATTATGATTCTGATANNCATATCCATGCATAAATCTTTCCCGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25599.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis