Browse Element(s) Details


Os.25752.1.S1_at

Description gb:AB109200.1
DB_XREF= gi:30314654
GEN=OsRFC1
TID=Os.25752.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.25752 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRFC1 mRNA for replication factor C 110 kDa subunit, complete cds.
PROD=replication factor C 110 kDa subunit
FL= gb:AK101875.1 gb:AB109200.1 gb:AK070564.1 gb:AK102991.1 gb:AK060194.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3639011/11BRCA1 C Terminus domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36350OsAffx.19187.1.S1_at11/1111+20917284..20918663F-box domain containing protein
LOC_Os11g36360OsAffx.22947.2.S1_x_at1/1111+20919358..20924513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g36370NANA11+20928801..20931941retrotransposon protein, putative, unclassified
LOC_Os11g36380NANA11+20933016..20938724retrotransposon protein, putative, unclassified
LOC_Os11g36390Os.25752.1.S1_at11/1111+20941735..20951593BRCA1 C Terminus domain containing protein, expressed
LOC_Os11g36400Os.56294.1.S1_at11/1111+20961065..20963169expressed protein
LOC_Os11g36410OsAffx.31324.1.S1_at11/1111+20967756..20970788NB-ARC domain containing protein
LOC_Os11g36420Os.21345.1.S1_at11/1111+20974391..20978324sialyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005663cellular_componentDNA replication factor C complex
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25752.1.S1_at--128--8271Chr11:20950340..20950364 (25 bp)
GGCAGCAATCCTTGAGCCAGTGGGA
LOC_Os11g36390
Os.25752.1.S1_at--255--1331Chr11:20950412..20950436 (25 bp)
AGAGGATTCCTCTGATGCTGAAAAT
LOC_Os11g36390
Os.25752.1.S1_at--1005--2311Chr11:20951171..20951193 (23 bp)
AAAGGGATCCAAGTGCAGCTCGACC
LOC_Os11g36390
Os.25752.1.S1_at--337--2551Chr11:20951217..20951241 (25 bp)
AACTCGAAGAAGATGCCGGCTGGTA
LOC_Os11g36390
Os.25752.1.S1_at--796--4211Chr11:20951318..20951342 (25 bp)
CCGCCGTCATTTAGTCGGTGGTGAA
LOC_Os11g36390
Os.25752.1.S1_at--2--7251Chr11:20951408..20951432 (25 bp)
GTCCCAATCATCTTTGTAGGCAGTA
LOC_Os11g36390
Os.25752.1.S1_at--492--1191Chr11:20951432..20951456 (25 bp)
AGTAGGCAATTGGTATCTGCTCCAG
LOC_Os11g36390
Os.25752.1.S1_at--1125--1251Chr11:20951455..20951479 (25 bp)
AGATATTTTGTTTCCTCCCACTTGT
LOC_Os11g36390
Os.25752.1.S1_at--518--10551Chr11:20951486..20951510 (25 bp)
TTCATTTCGCTCTACTGGCATTTGG
LOC_Os11g36390
Os.25752.1.S1_at--942--211Chr11:20951505..20951529 (25 bp)
ATTTGGCCAGTTTTCAGCTTTGCAA
LOC_Os11g36390
Os.25752.1.S1_at--265--7271Chr11:20951536..20951560 (25 bp)
GTCCATTATTGTTGACTTCCGTTCA
LOC_Os11g36390
Target Sequence 
GGCAGCAATCCTTGAGCCAGTGGGAGAGAGTTTGCCTGAAGAAAATGGAGTAGCGTCATCTGAAGGCGATGAAGAGGATT
CCTCTGATGCTGAAAATAATGATGAACTGGTGCCTGGTGACACAAAACCAAAACTGGACCTGCAGAGTGATAAGAAGAAA
GGGATCCAAGTGCAGCTCGACCTGAAGAGCAATGGCAATGGCTTGAACTCGAAGAAGATGCCGGCTGGTAGATCAAAAGC
TTCTGGCTCTGCTGGGAAGGCTGCTGGAGGCTCAGGTGGGAAGAGGAAGAGGTAAACGTCCGCCGGCCGCCGTCATTTAG
TCGGTGGTGAATCTACATGAACATCCTCTGATATTCTGGGGCAGAATGCGGTTCAAATTTTCTTGCTTGTACATNAGTCC
CAATCATCTTTGTAGGCAGTAGTAGGCAATTGGTATCTGCTCCAGATATTTTGTTTCCTCCCACTTGTATGAGCTTCATT
TCGCTCTACTGGCATTTGGCCAGTTTTCAGCTTTGCAAGACAACGTCCATTATTGTTGACTTCCGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis