Browse Element(s) Details


Os.25825.1.S1_at

Description gb:AK059432.1
DB_XREF= gi:32969450
TID=Os.25825.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F04, full insert sequence.
FL= gb:AK059432.1 gb:AK059026.1 gb:AK069305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2288011/11Nucleolar protein Nop56, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22830Os.9901.1.S1_at11/113+13177857..13180130Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g22840Os.25754.2.S1_x_at2/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22840OsAffx.31069.2.S1_x_at1/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22840Os.53479.1.S1_x_at1/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22850OsAffx.20387.1.S1_x_at2/113+13186585..13192714retrotransposon protein, putative, unclassified, expressed
LOC_Os03g22860NANA3+13194202..13195149hypothetical protein
LOC_Os03g22870Os.6507.1.S1_at11/113+13196884..13201064SAC3/GANP family protein, expressed
LOC_Os03g22880Os.25825.1.S1_at11/113+13201376..13204309Nucleolar protein Nop56, putative, expressed
LOC_Os03g22890Os.26043.1.S1_at11/113+13206155..13210903Nucleolar GTP-binding protein 2, putative, expressed
LOC_Os03g22900Os.48420.1.A1_at11/113+13215516..13226730transcriptional activator, putative, expressed
LOC_Os03g22910OsAffx.25197.1.S1_at11/113+13228297..13228654hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005730cellular_componentnucleolus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25825.1.S1_at--1002--4611Chr03:13201921..13201945 (25 bp)
GCGAGAAGGTCGATGCATCTGCCAA
LOC_Os03g22880
Os.25825.1.S1_at--836--2951Chr03:13201851..13201875 (25 bp)
AATGGACCTGGACAAGCCTTCCAAT
LOC_Os03g22880
Os.25825.1.S1_at--231--2851Chr03:13201669..13201693 (25 bp)
AAGTCTCGGAGGACGCTGAGCCTAA
LOC_Os03g22880
Os.25825.1.S1_at--447--4751Chr03:13201655..13201679 (25 bp)
GCTGAGCCTAAGACGGCCACTGAAG
LOC_Os03g22880
Os.25825.1.S1_at--464--8891Chr03:13201589..13201613 (25 bp)
TGAGTGATCGGTTTGCCTACTTGCA
LOC_Os03g22880
Os.25825.1.S1_at--518--9051Chr03:13201568..13201592 (25 bp)
TGCATGGCTGATCTTTCTGATTAGT
LOC_Os03g22880
Os.25825.1.S1_at--597--3711Chr03:13201514..13201538 (25 bp)
CTAGATTCCTAGTTCCTGAAGACAA
LOC_Os03g22880
Os.25825.1.S1_at--568--3851Chr03:13201481..13201505 (25 bp)
CTGAACTATGAAATTGCCCTCCCAT
LOC_Os03g22880
Os.25825.1.S1_at--937--3751Chr03:13201455..13201479 (25 bp)
CTCTTTCCCTCATTCGATGTTATCA
LOC_Os03g22880
Os.25825.1.S1_at--1038--7471Chr03:13201425..13201449 (25 bp)
GTGTGTGATAGATGCTCCGGAATTA
LOC_Os03g22880
Os.25825.1.S1_at--1056--10111Chr03:13201388..13201412 (25 bp)
TATCGCTGCCGTTATAACAAAACTT
LOC_Os03g22880
Target Sequence 
GCGAGAAGGTCGATGCATCTGCCAAGAAAAGTAAGAAAAAGAAGTCTAAAGCTGAAGCTGACNGCGAAGCAATGGACCTG
GACAAGCCTTCCAATNTGGCTGATGAAGCTGAGCCTGGANACTGAGAAGAAGAAAAAGAAGAAGAAGCACAAGCTGGAGG
AGGAGCCACAGGAGCAGGAGAAGAGCGTGGCGCATGCCAATGGCGACGCCGANGAGAACGGTACTCCCAAGAAGAAGAAG
AAGAAGAACCGTGAAGTCTCGGAGGACGCTGAGCCTAAGACGGCCACTGAAGGGAAGAAGAAAAAGAAGAAGTCCAAGAC
NGAGGACAGCGACTGAGTGATCGGTTTGCCTACTTGCATGGCTGATCTTTCTGATTAGTGTTGTTGGAAGCAGAGTTAAA
AAAAACACCTAGATTCCTAGTTCCTGAAGACAAGAGCAGTCCTGAACTATGAAATTGCCCTCCCATCCTCTTTCCCTCAT
TCGATGTTATCAATTTTGTGTGTGATAGATGCTCCGGAATTATTGGGAGCGAANTATCGCTGCCGTTATAACAAAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis