Browse Element(s) Details


Os.25986.1.S1_a_at

Description gb:AK072579.1
DB_XREF= gi:32982602
TID=Os.25986.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25986 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1626B05.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023130B17, full insert sequence.
FL= gb:AK072579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1261011/115'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12580OsAffx.22279.1.S1_at11/113+6653353..6654586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12590Os.10603.1.S1_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12590Os.43914.1.S1_x_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12600OsAffx.32166.1218.S1_x_at5/113+6666205..6674361retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g12610Os.25986.3.S1_x_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12610Os.25986.1.S1_a_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12620Os.45998.1.S1_x_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620Os.45998.1.S1_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620OsAffx.25070.1.S1_at2/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12630Os.53367.1.S1_at11/113+6695524..6699225expressed protein
LOC_Os03g12630Os.51565.1.S1_x_at10/113+6695524..6699225expressed protein
LOC_Os03g12640OsAffx.3210.1.S1_at11/113+6699862..6700210hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25986.1.S1_a_at--138--4751Chr03:6685056..6685080 (25 bp)
GCTGATGTTTCCAGCAGTGACAACA
LOC_Os03g12610
Os.25986.1.S1_a_at--400--2731Chr03:6685093..6685117 (25 bp)
AAGCACAAAAGTTCCACCTGAGAAG
LOC_Os03g12610
Os.25986.1.S1_a_at--875--271Chr03:6685118..6685142 (25 bp)
ATAGGTGCCTTGGTGCTATGTTTCT
LOC_Os03g12610
Os.25986.1.S1_a_at--566--4871Chr03:6685132..6685156 (25 bp)
GCTATGTTTCTGTCAAATTTGGTGC
LOC_Os03g12610
Os.25986.1.S1_a_at--948--4791Chr03:6685162..6685186 (25 bp)
GCTCGCTGTGCTTTCTGGCACAAAA
LOC_Os03g12610
Os.25986.1.S1_a_at--804--5751Chr03:6685191..6685215 (25 bp)
GACGGTGCATGTTTAGACAGGCTGT
LOC_Os03g12610
Os.25986.1.S1_a_at--997--5651Chr03:6685206..6685230 (25 bp)
GACAGGCTGTGCATACCATGAAACT
LOC_Os03g12610
Os.25986.1.S1_a_at--891--3491Chr03:6685264..6685288 (25 bp)
CATGGCTCATGCAATCTACAGAACA
LOC_Os03g12610
Os.25986.1.S1_a_at--823--5371Chr03:6685336..6685360 (25 bp)
GAAGAATGGCATGTAGGTACCTGAA
LOC_Os03g12610
Os.25986.1.S1_a_at--739--7831Chr03:6685351..6685375 (25 bp)
GGTACCTGAAAGCTTAATCATTCGA
LOC_Os03g12610
Os.25986.1.S1_a_at--479--7371Chr03:6685406..6685430 (25 bp)
GTGACATGTCACTATTCATATGCAC
LOC_Os03g12610
Target Sequence 
GCTGATGTTTCCAGCAGTGACAACATACGAACTTTTCAAGCACAAAAGTTCCACCTGAGAAGATAGGTGCCTTGGTGCTA
TGTTTCTGTCAAATTTGGTGCGAGCGGCTCGCTGTGCTTTCTGGCACAAAAGGTGGACGGTGCATGTTTAGACAGGCTGT
GCATACCATGAAACTGATAATTAGTTAGTTTTGTAGATAAAAGCACGTCATGGCTCATGCAATCTACAGAACATGATATT
TTTTACACTCTAATGAATGGTGGCTGCTGGCTGGAAGGTGGAAGAATGGCATGTAGGTACCTGAAAGCTTAATCATTCGA
TTATGTGCAACTTCGTAGAAATATTATCTAGTGACATGTCACTATTCATATGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25986.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis