Browse Element(s) Details


Os.25986.3.S1_x_at

Description gb:NM_187620.1
DB_XREF= gi:34902325
GEN=OJ1626B05.7
TID=Os.25986.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25986 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Unknown protein (OJ1626B05.7), mRNA.
PROD=Unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1261011/115'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12580OsAffx.22279.1.S1_at11/113+6653353..6654586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12590Os.10603.1.S1_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12590Os.43914.1.S1_x_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12600OsAffx.32166.1218.S1_x_at5/113+6666205..6674361retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g12610Os.25986.3.S1_x_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12610Os.25986.1.S1_a_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12620Os.45998.1.S1_x_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620Os.45998.1.S1_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620OsAffx.25070.1.S1_at2/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12630Os.53367.1.S1_at11/113+6695524..6699225expressed protein
LOC_Os03g12630Os.51565.1.S1_x_at10/113+6695524..6699225expressed protein
LOC_Os03g12640OsAffx.3210.1.S1_at11/113+6699862..6700210hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25986.3.S1_x_at--730--6791Chr03:6682289..6682313 (25 bp)
GTTATTGGCACACTAGCTGTCAGCA
LOC_Os03g12610
Os.25986.3.S1_x_at--341--6891Chr03:6682316..6682336 (21 bp)
GTATCTGCAGGCTACAAGGTACGGA
LOC_Os03g12610
Os.25986.3.S1_x_at--70--2911Chr03:6682734..6682758 (25 bp)
AAGGTACGGATTGTCTCCCCTGATA
LOC_Os03g12610
Os.25986.3.S1_x_at--284--1411Chr03:6682760..6682784 (25 bp)
AGACTTCTTCCAAATTCTTTCACCT
LOC_Os03g12610
Os.25986.3.S1_x_at--695--10331Chr03:6682777..6682801 (25 bp)
TTTCACCTTCTTTACGTTTGCTGAG
LOC_Os03g12610
Os.25986.3.S1_x_at--360--7931Chr03:6682801..6682823 (23 bp)
GGATTGCTCCTCGTGGTTCTGGGAT
LOC_Os03g12610
Os.25986.3.S1_x_at--499--1891Chr03:6682974..6682998 (25 bp)
ACGTTGTTGCGCTTTCTGGAGATAA
LOC_Os03g12610
Os.25986.3.S1_x_at--937--2411Chr03:6684610..6684768 (25 bp)
AAAAGCCTGGCCACATTACGTTCTG
LOC_Os03g12610
Os.25986.3.S1_x_at--84--6731Chr03:6684763..6684787 (25 bp)
GTTCTGACCTTCCATCCTATATGGT
LOC_Os03g12610
Os.25986.3.S1_x_at--368--1411Chr03:6684796..6684820 (25 bp)
AGACATCGGATCTTGTGTTTCAGAA
LOC_Os03g12610
Os.25986.3.S1_x_at--330--5051Chr03:6684983..6685007 (25 bp)
GCAGAAGGCTCGTCAGCAGACCTAA
LOC_Os03g12610
Target Sequence 
GTTATTGGCACACTAGCTGTCAGCAGTGTATCTGCAGGCTACAAGGTACGGATTGTCTCCCCTGATAAAGACTTCTTCCA
AATTCTTTCACCTTCTTTACGTTTGCTGAGGATTGCTCCTCGTGGTTCTGGGATGGTTTCATTTGGAGTTGAAGACTTTG
TCAAGAGATATGGAGCACTGAAACCATCACAGTTTGTTGACGTTGTTGCGCTTTCTGGAGATAAAGCCGACAATATACCA
GGAGTTGAAGGGATTGGAGATATTAATGCGGTAAAACTGATAACTAAGTTTGGTTCCTTGGAGAATCTGTTGAAATCTGT
GGATGAAGTTGAGGAAGAACGAATTAAACAGGCTTTGATATCTCAATCTGAACAAGCAATGCTTTGCAAAAGCCTGGCCA
CATTACGTTCTGACCTTCCATCCTATATGGTTCCTTTTAAGACATCGGATCTTGTGTTTCAGAAGCCAAAGGATGATGGA
GCCAAATTCATAAAACTCTTGCGAGCTTTGGAAGCATATGCAGAAGGCTCGTCAGCAGACCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25986.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis