Browse Element(s) Details


Os.26088.1.A1_x_at

Description gb:BI306108
DB_XREF= gi:14981430
DB_XREF=NL_3_F20
CLONE=NL_3_F20
TID=Os.26088.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.26088 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g393307/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39300Os.10113.1.S1_at11/118+24695267..24698022Serine-glyoxylate aminotransferase, putative, expressed
LOC_Os08g39310Os.12517.1.A1_at11/118+24704847..24709249SWIB/MDM2 domain containing protein, expressed
LOC_Os08g39320OsAffx.17415.1.S1_at11/118+24710021..24711341hypothetical protein
LOC_Os08g39330Os.6423.1.S1_at11/118+24721442..24722816expressed protein
LOC_Os08g39330Os.26088.1.A1_x_at7/118+24721442..24722816expressed protein
LOC_Os08g39330Os.15871.1.A1_at2/118+24721442..24722816expressed protein
LOC_Os08g39340OsAffx.29598.1.S1_at11/118+24728294..24731473expressed protein
LOC_Os08g39350Os.9696.1.S1_at11/118+24733098..24739315Glycerophosphoryl diester phosphodiesterase family protein, expressed
LOC_Os08g39360OsAffx.6083.1.S1_at11/118+24745902..24747010hypothetical protein
LOC_Os08g39360OsAffx.24232.2.S1_s_at1/118+24745902..24747010hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26088.1.A1_x_at--1150--3551NONE
CATCACTAGTCATCATCATCAGTTC
NONE
Os.26088.1.A1_x_at--124--9651Chr08:24721520..24721544 (25 bp)
TCAGTTCATCACCAATGGCCACCGT
LOC_Os08g39330
Os.26088.1.A1_x_at--551--1211Chr08:24721522..24721546 (25 bp)
AGTTCATCACCAATGGCCACCGTCG
LOC_Os08g39330
Os.26088.1.A1_x_at--1147--6731Chr08:24721523..24721547 (25 bp)
GTTCATCACCAATGGCCACCGTCGA
LOC_Os08g39330
Os.26088.1.A1_x_at--505--391Chr08:24721527..24721549 (23 bp)
ATCACCAATGGCCACCGTCGAGGTC
LOC_Os08g39330
Os.26088.1.A1_x_at--629--1691Chr08:24721530..24721728 (25 bp)
ACCAATGGCCACCGTCGAGGTCCAA
LOC_Os08g39330
Os.26088.1.A1_x_at--1148--4371NONE
GCCACCGTCGAGGTCCAAGCAGTCG
NONE
Os.26088.1.A1_x_at--1145--3931NONE
CGGCTGCGCCGGTCGAAGAGACAAA
NONE
Os.26088.1.A1_x_at--440--3831NONE
CTGCGCCGGTCGAAGAGACAAAGCC
NONE
Os.26088.1.A1_x_at--134--7811Chr08:24722240..24722264 (25 bp)
GGTCGAAGAGACAAAGCCGGCAGAT
LOC_Os08g39330
Os.26088.1.A1_x_at--1072--2351Chr08:24722252..24722275 (24 bp)
AAAGCCGGCAGATGATCAGGCTGCT
LOC_Os08g39330
Target Sequence 
CATCACTAGTCATCATCATCAGTTCATCACCAATGGCCACCGTCGAGGTCCAAGCAGTCGCCNCCGCCCCTAGTCTGGCG
GCGGAGNAGGCTCCGNCCGTGGTGNAGGCTGTCCAGGAGCCGGTCGTCGCCGCCGTTGAGGAGNAAGAAGGCGCCACCGC
CGCCGCCGNTGCGGCTGCGGCTGCGCCGGTCGAAGAGACAAAGCCGGCAGATGATCAGGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26088.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis