Browse Element(s) Details


Os.26384.1.S1_at

Description gb:AB107218.1
DB_XREF= gi:41529311
TID=Os.26384.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26384 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for glucose-6-phosphate isomerase, complete cds.
PROD=glucose-6-phosphate isomerase
FL= gb:AB107218.1 gb:AK068061.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2907010/11Glucose-6-phosphate isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28990NANA9+17622708..17623887hypothetical protein
LOC_Os09g29000OsAffx.22699.1.S1_x_at2/119+17624640..17629210retrotransposon protein, putative, unclassified
LOC_Os09g29010NANA9+17631049..17632587hypothetical protein
LOC_Os09g29020NANA9+17632816..17633758transposon protein, putative, unclassified
LOC_Os09g29030OsAffx.17958.1.S1_at11/119+17634624..17635178hypothetical protein
LOC_Os09g29040NANA9+17640165..17640861hypothetical protein
LOC_Os09g29050OsAffx.30071.1.S1_at6/119+17641594..17642559Mitochondrial carrier protein
LOC_Os09g29060Os.49593.1.S1_x_at11/119+17644486..17647500expressed protein
LOC_Os09g29070Os.26384.1.S1_at10/119+17647474..17652620Glucose-6-phosphate isomerase, putative, expressed
LOC_Os09g29080OsAffx.6434.1.S1_at10/119+17658912..17661226expressed protein
LOC_Os09g29080Os.51431.1.S1_at9/119+17658912..17661226expressed protein
LOC_Os09g29090OsAffx.9699.1.S1_at1/119+17666908..17671358retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005982biological_processstarch metabolism
GO:0006094biological_processgluconeogenesis
GO:0006096biological_processglycolysis
GO:0009911biological_processpositive regulation of flower development
GO:0009536cellular_componentplastid
GO:0004347molecular_functionglucose-6-phosphate isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26384.1.S1_at--91--2731Chr09:17648926..17648950 (25 bp)
AAGAAGTTACTCCTAGGGCTGTTGG
LOC_Os09g29070
Os.26384.1.S1_at--547--3871Chr09:17648908..17648932 (25 bp)
CTGTTGGAGCGCTGGTTGCTCTATA
LOC_Os09g29070
Os.26384.1.S1_at--715--6671Chr09:17648894..17648918 (25 bp)
GTTGCTCTATATGAACGTGCTGTGG
LOC_Os09g29070
Os.26384.1.S1_at--629--7311Chr09:17648673..17648697 (25 bp)
GTGCTGACTGTTCTGAATGAGGCCA
LOC_Os09g29070
Os.26384.1.S1_at--823--2991NONE
AATGAGGCCAGCTGCAAGGATCCTG
NONE
Os.26384.1.S1_at--16--2911Chr09:17648071..17648095 (25 bp)
AAGGATCCTGCCGAGCCGTTGACGC
LOC_Os09g29070
Os.26384.1.S1_at--146--3111Chr09:17648039..17648063 (25 bp)
AATAGCAGAGCGCTGTCATTGCCCT
LOC_Os09g29070
Os.26384.1.S1_at--512--291Chr09:17647843..17647867 (25 bp)
ATAGCAGAAGGCAGCTGCGGTTCTC
LOC_Os09g29070
Os.26384.1.S1_at--301--4731Chr09:17647692..17647716 (25 bp)
GCTGGGCCATGCATTGTTCCAATGA
LOC_Os09g29070
Os.26384.1.S1_at--781--10611Chr09:17647652..17647676 (25 bp)
TTCGGTTGCAAATGGCATGACTGCC
LOC_Os09g29070
Os.26384.1.S1_at--20--8951Chr09:17647635..17647659 (25 bp)
TGACTGCCGCAACCCTGTACTTTAG
LOC_Os09g29070
Target Sequence 
AAGAAGTTACTCCTAGGGCTGTTGGAGCGCTGGTTGCTCTATATGAACGTGCTGTGGGGATTTATGCTTCTTTAGTAAAT
ATCAATGCCTATCATCAGCCTGGTGTTGAGGCTGGGAAAAAGGCAGCAGGTGAAGTGTTGGCACTTCAGAAGAGGGTGCT
GACTGTTCTGAATGAGGCCAGCTGCAAGGATCCTGCCGAGCCGTTGACGCTGGATCAAATAGCAGAGCGCTGTCATTGCC
CTGAAGATATTGAGATGATATACAAAATAATCCAGCACATGGCAGCAAATGATAGAGCGCTCATAGCAGAAGGCAGCTGC
GGTTCTCCTCGAAGCATCAAGGTTTACCTTGGAGAATGCAATGTAGATGAGGATATGCTTGCTGCTTAGAATTTCCGGTC
TTGGATGTGTGTAAAATTGGGTGGGCTTTGGAATAAAAGGAACGACGCCTATGGCTGGGCCATGCATTGTTCCAATGAGC
AATTAGTTTTTTATTCGGTTGCAAATGGCATGACTGCCGCAACCCTGTACTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis