Browse Element(s) Details


OsAffx.17958.1.S1_at

Description tigr:9637.m02563
TID=OsAffx.17958.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2903011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28950OsAffx.17957.1.S1_at11/119+17612253..17613981hypothetical protein
LOC_Os09g28960NANA9+17615112..17617684retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g28970OsAffx.20387.1.S1_x_at2/119+17617937..17620748transposon protein, putative, unclassified
LOC_Os09g28980Os.25754.2.S1_x_at3/119+17621478..17622124hypothetical protein
LOC_Os09g28980Os.53479.1.S1_x_at1/119+17621478..17622124hypothetical protein
LOC_Os09g28990NANA9+17622708..17623887hypothetical protein
LOC_Os09g29000OsAffx.22699.1.S1_x_at2/119+17624640..17629210retrotransposon protein, putative, unclassified
LOC_Os09g29010NANA9+17631049..17632587hypothetical protein
LOC_Os09g29020NANA9+17632816..17633758transposon protein, putative, unclassified
LOC_Os09g29030OsAffx.17958.1.S1_at11/119+17634624..17635178hypothetical protein
LOC_Os09g29040NANA9+17640165..17640861hypothetical protein
LOC_Os09g29050OsAffx.30071.1.S1_at6/119+17641594..17642559Mitochondrial carrier protein
LOC_Os09g29060Os.49593.1.S1_x_at11/119+17644486..17647500expressed protein
LOC_Os09g29070Os.26384.1.S1_at10/119+17647474..17652620Glucose-6-phosphate isomerase, putative, expressed
LOC_Os09g29080OsAffx.6434.1.S1_at10/119+17658912..17661226expressed protein
LOC_Os09g29080Os.51431.1.S1_at9/119+17658912..17661226expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17958.1.S1_at--88--5651Chr09:17634698..17634722 (25 bp)
GACAGCGCCGTCACAGGAATCCACA
LOC_Os09g29030
OsAffx.17958.1.S1_at--1026--4991Chr09:17634771..17634795 (25 bp)
GCAGGCGTCCACGTCTCCGATGTTG
LOC_Os09g29030
OsAffx.17958.1.S1_at--1149--1891Chr09:17634781..17634805 (25 bp)
ACGTCTCCGATGTTGCCGCTGTGGA
LOC_Os09g29030
OsAffx.17958.1.S1_at--1005--711Chr09:17634790..17634814 (25 bp)
ATGTTGCCGCTGTGGAGTACTCGTC
LOC_Os09g29030
OsAffx.17958.1.S1_at--380--6691Chr09:17634792..17634816 (25 bp)
GTTGCCGCTGTGGAGTACTCGTCCA
LOC_Os09g29030
OsAffx.17958.1.S1_at--1141--3871Chr09:17634799..17634823 (25 bp)
CTGTGGAGTACTCGTCCACCCTCGT
LOC_Os09g29030
OsAffx.17958.1.S1_at--263--7231Chr09:17634822..17634846 (25 bp)
GTCGCCATGGGAGTCCACGCGTCCT
LOC_Os09g29030
OsAffx.17958.1.S1_at--507--7091Chr09:17635002..17635026 (25 bp)
GTCACGGCTTGCTCCGGCATGGTGC
LOC_Os09g29030
OsAffx.17958.1.S1_at--301--9111Chr09:17635011..17635035 (25 bp)
TGCTCCGGCATGGTGCTGGCGCCAA
LOC_Os09g29030
OsAffx.17958.1.S1_at--1000--8191Chr09:17635055..17635079 (25 bp)
GGAAGTGGTGCAACCTGTTGCTGAT
LOC_Os09g29030
OsAffx.17958.1.S1_at--689--3251Chr09:17635065..17635089 (25 bp)
CAACCTGTTGCTGATGAGGCTGAGA
LOC_Os09g29030
Target Sequence 
GACAGCGCCGTCACAGGAATCCACACCTCCACCCCTCATCGCCACGGATGACTTCGCCTCCGCCCTCGTGACCGCAGGCG
TCCACGTCTCCGATGTTGCCGCTGTGGAGTACTCGTCCACCCTCGTCGCCATGGGAGTCCACGCGTCCTCCCTCGCCGTC
ACGAGAGTCCACACCTCTGCCCTCACCGACACGGACGATCTCGCCTCCGCCCTTGCGGCCACAGACGCCACACCTCCCCC
ACTCGCGGCCGCACGCGCCACGCCTCCGACCTCGCCGCCGGGGAAGTCCATGCCTCCGACCTCCGTCACGGCTTGCTCCG
GCATGGTGCTGGCGCCAACGGCCTGCGGGAGGATGGAGGAAGTGGTGCAACCTGTTGCTGATGAGGCTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis