Browse Element(s) Details


OsAffx.17957.1.S1_at

Description tigr:9637.m02555
TID=OsAffx.17957.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2895011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28930NANA9+17587283..17588287DNA-binding protein, putative
LOC_Os09g28940OsAffx.30070.1.S1_at11/119+17599529..17607512Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os09g28950OsAffx.17957.1.S1_at11/119+17612253..17613981hypothetical protein
LOC_Os09g28960NANA9+17615112..17617684retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g28970OsAffx.20387.1.S1_x_at2/119+17617937..17620748transposon protein, putative, unclassified
LOC_Os09g28980Os.25754.2.S1_x_at3/119+17621478..17622124hypothetical protein
LOC_Os09g28980Os.53479.1.S1_x_at1/119+17621478..17622124hypothetical protein
LOC_Os09g28990NANA9+17622708..17623887hypothetical protein
LOC_Os09g29000OsAffx.22699.1.S1_x_at2/119+17624640..17629210retrotransposon protein, putative, unclassified
LOC_Os09g29010NANA9+17631049..17632587hypothetical protein
LOC_Os09g29020NANA9+17632816..17633758transposon protein, putative, unclassified
LOC_Os09g29030OsAffx.17958.1.S1_at11/119+17634624..17635178hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17957.1.S1_at--1043--3571Chr09:17612823..17612847 (25 bp)
CATTCACGACGCTACTGCTGGTTGG
LOC_Os09g28950
OsAffx.17957.1.S1_at--357--1091Chr09:17612790..17612814 (25 bp)
AGTGGCCTCGGCTGCAGTGATGGGA
LOC_Os09g28950
OsAffx.17957.1.S1_at--333--4731Chr09:17612760..17612784 (25 bp)
GCTGGTGTCTGAGATGTGCCTACAT
LOC_Os09g28950
OsAffx.17957.1.S1_at--898--7271Chr09:17612745..17612769 (25 bp)
GTGCCTACATAGAGCGAAGATCGAC
LOC_Os09g28950
OsAffx.17957.1.S1_at--1148--911Chr09:17612664..17612688 (25 bp)
AGGCAGTGCTAGGTGCTGGTGCGCA
LOC_Os09g28950
OsAffx.17957.1.S1_at--120--1811Chr09:17612581..17612605 (25 bp)
ACCGCCACGTGGTCGAGCTAGAGGA
LOC_Os09g28950
OsAffx.17957.1.S1_at--630--10691Chr09:17612382..17612406 (25 bp)
TTGCCAACGGCATCCAAGTAGTCGT
LOC_Os09g28950
OsAffx.17957.1.S1_at--214--591Chr09:17612371..17612395 (25 bp)
ATCCAAGTAGTCGTGCAAGTCGTGC
LOC_Os09g28950
OsAffx.17957.1.S1_at--728--9111Chr09:17612327..17612351 (25 bp)
TGCTGCTCCTCTCTTGCCGAGAACA
LOC_Os09g28950
OsAffx.17957.1.S1_at--60--9531Chr09:17612318..17612342 (25 bp)
TCTCTTGCCGAGAACATCGCTCAAG
LOC_Os09g28950
OsAffx.17957.1.S1_at--179--5492Chr09:17612307..17612331 (25 bp)
GAACATCGCTCAAGGGAAGAAGACA
LOC_Os09g28950
Target Sequence 
CATTCACGACGCTACTGCTGGTTGGTGGTGGTCAGTGGCCTCGGCTGCAGTGATGGGAGATGCGCTGGTGTCTGAGATGT
GCCTACATAGAGCGAAGATCGACGCGGTAGTGCGGATGGAGTGTGAGCGGATGCACGACGGGCTGGAGCAGGCGCGGAGA
GGCAGTGCTAGGTGCTGGTGCGCATGGCGTTGGCGTTGGCTGCAGTGGCTACGGGAGAAGGAGGCCGAGCTCGACGCTGC
TCACCGCCACGTGGTCGAGCTAGAGGAGCTGCTCCGTCACGCTGCCACCGAGAGCCAGGCGTGTGCGGGCTCGCCTGCAG
CAACGAGGCCGTTGCGGCTGGCATCCGCCTCACCTTCGACCACCTCCTCCTCCGCAACGCCCCCGCCCAATGCTTCGGCG
ACTCCGACGCCCTCGCTGTCGTGGCGGACAACGCCTCCACCTTGCCAACGGCATCCAAGTAGTCGTGCAAGTCGTGCGGT
GAGGACGACGCCACCATGCTGCTCCTCTCTTGCCGAGAACATCGCTCAAGGGAAGAAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis