Browse Element(s) Details


OsAffx.30070.1.S1_at

Description tigr:9637.m02554
TID=OsAffx.30070.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=gene_id:MNA5.19
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2894011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28920NANA9+17576912..17577926expressed protein
LOC_Os09g28930NANA9+17587283..17588287DNA-binding protein, putative
LOC_Os09g28940OsAffx.30070.1.S1_at11/119+17599529..17607512Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os09g28950OsAffx.17957.1.S1_at11/119+17612253..17613981hypothetical protein
LOC_Os09g28960NANA9+17615112..17617684retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g28970OsAffx.20387.1.S1_x_at2/119+17617937..17620748transposon protein, putative, unclassified
LOC_Os09g28980Os.25754.2.S1_x_at3/119+17621478..17622124hypothetical protein
LOC_Os09g28980Os.53479.1.S1_x_at1/119+17621478..17622124hypothetical protein
LOC_Os09g28990NANA9+17622708..17623887hypothetical protein
LOC_Os09g29000OsAffx.22699.1.S1_x_at2/119+17624640..17629210retrotransposon protein, putative, unclassified
LOC_Os09g29010NANA9+17631049..17632587hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30070.1.S1_at--1160--231Chr09:17600073..17600097 (25 bp)
ATATAGTCTATGACCTCACCTACAC
LOC_Os09g28940
OsAffx.30070.1.S1_at--910--2051Chr09:17600050..17600074 (25 bp)
ACATTCGGTGGCTCATCTTATACAG
LOC_Os09g28940
OsAffx.30070.1.S1_at--532--9551Chr09:17600035..17600059 (25 bp)
TCTTATACAGTAGTGGAGTCCCCGA
LOC_Os09g28940
OsAffx.30070.1.S1_at--311--6111Chr09:17600020..17600044 (25 bp)
GAGTCCCCGAGTCCAAGTGACAGCT
LOC_Os09g28940
OsAffx.30070.1.S1_at--461--1031Chr09:17599970..17599994 (25 bp)
AGGGTCAACCAGCACTTTCAGTAGT
LOC_Os09g28940
OsAffx.30070.1.S1_at--459--1591Chr09:17599885..17599909 (25 bp)
AGCTCGGATCAAATGTACCCTGTAA
LOC_Os09g28940
OsAffx.30070.1.S1_at--171--5491Chr09:17599834..17599858 (25 bp)
GAACTTAGCTATTCGCGGCAGAGGT
LOC_Os09g28940
OsAffx.30070.1.S1_at--281--8271Chr09:17599818..17599842 (25 bp)
GGCAGAGGTCTAGCTTGAACCCCAG
LOC_Os09g28940
OsAffx.30070.1.S1_at--39--5451Chr09:17599802..17599826 (25 bp)
GAACCCCAGCACTTCAAGTCAATAT
LOC_Os09g28940
OsAffx.30070.1.S1_at--294--591Chr09:17599696..17599720 (25 bp)
ATGCCATTCTTCTATTCCAACCAAG
LOC_Os09g28940
OsAffx.30070.1.S1_at--1117--5991Chr09:17599570..17599594 (25 bp)
GAGGGCCATGGCAGCGTTTTACTTA
LOC_Os09g28940
Target Sequence 
ATATAGTCTATGACCTCACCTACACATTCGGTGGCTCATCTTATACAGTAGTGGAGTCCCCGAGTCCAAGTGACAGCTCC
TCGCTGTTCAGCAACTCTGATGCAGGGTCAACCAGCACTTTCAGTAGTGATAGCACTGACAGCACAAGGAATTCGACCAG
CATGGAGGAGTATGATTACATATTTGGAAGCTCGGATCAAATGTACCCTGTAAGCACGGTGGTTATACCTGAGGAACATG
AACTTAGCTATTCGCGGCAGAGGTCTAGCTTGAACCCCAGCACTTCAAGTCAATATGTGGATCAAGCAGCTGAGGTTGAG
ATGCTGCACCAGCACCAGCATCAGGCCGGCAGAGGGGGCTGGGATGAGGGTGATGTGATGCCATTCTTCTATTCCAACCA
AGGTAAACACCACGATAGTAGTAGAAGTAGCAACATTAGTAGTAGTAATAGGAAGTTAACAGAACAGCGTAGGACGATTG
GGGAGGTTGACCATGGCCCTGGAGAGGGCCATGGCAGCGTTTTACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis