Browse Element(s) Details


Os.26397.1.S1_at

Description gb:AK071330.1
DB_XREF= gi:32981353
TID=Os.26397.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29982 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089G15, full insert sequence.
FL= gb:AK071330.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3990611/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39890OsAffx.15850.1.S1_at11/116+23706545..23708083hypothetical protein
LOC_Os06g39890OsAffx.29628.1.S1_at1/116+23706545..23708083hypothetical protein
LOC_Os06g39900Os.15722.1.S1_s_at11/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39900Os.52129.1.S1_at11/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39900OsAffx.28016.1.S1_at2/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39906Os.26397.1.S1_at11/116+23731558..23733539Homeobox domain containing protein, expressed
LOC_Os06g39912Os.37009.1.S1_at11/116+23735838..23736879expressed protein
LOC_Os06g39912OsAffx.5065.1.S1_x_at8/116+23735838..23736879expressed protein
LOC_Os06g39920NANA6+23742165..23746361retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39930NANA6+23747418..23753573retrotransposon protein, putative, unclassified
LOC_Os06g39940NANA6+23753901..23757420transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26397.1.S1_at--758--7691Chr06:23733142..23733166 (25 bp)
GGGTACCTGACCATCGAGTTGCATT
LOC_Os06g39906
Os.26397.1.S1_at--12--6071Chr06:23733157..23733181 (25 bp)
GAGTTGCATTCAAGAGATCCCTATC
LOC_Os06g39906
Os.26397.1.S1_at--1105--6371Chr06:23733172..23733196 (25 bp)
GATCCCTATCTGAGACCATAGCTAG
LOC_Os06g39906
Os.26397.1.S1_at--832--10451Chr06:23733214..23733238 (25 bp)
TTAGCATGTATGATGGTTTCCTCTT
LOC_Os06g39906
Os.26397.1.S1_at--976--7851Chr06:23733228..23733252 (25 bp)
GGTTTCCTCTTTGAACTATTTGCAA
LOC_Os06g39906
Os.26397.1.S1_at--100--5231Chr06:23733281..23733305 (25 bp)
GAATTTCTGCAAGCCCAATATGGAG
LOC_Os06g39906
Os.26397.1.S1_at--1118--10051Chr06:23733318..23733342 (25 bp)
TAGTACTCCCATATCAACCAATGTG
LOC_Os06g39906
Os.26397.1.S1_at--1019--7831Chr06:23733346..23733370 (25 bp)
GGTACAACTCTTAATTGCCACTTTG
LOC_Os06g39906
Os.26397.1.S1_at--1070--6451Chr06:23733370..23733394 (25 bp)
GATAATTTTATTTGTTGCACTCTGG
LOC_Os06g39906
Os.26397.1.S1_at--1086--7671Chr06:23733434..23733458 (25 bp)
GGGTTCTGTTGACCAGATCTTGATT
LOC_Os06g39906
Os.26397.1.S1_at--481--111Chr06:23733484..23733506 (23 bp)
ATTCTGTCTTGTTCTTGCTTAGAGG
LOC_Os06g39906
Target Sequence 
GGGTACCTGACCATCGAGTTGCATTCAAGAGATCCCTATCTGAGACCATAGCTAGTTGATAATTACTTCAAATTAGCATG
TATGATGGTTTCCTCTTTGAACTATTTGCAAATTCTAAATTTGAATTTTTGAAGTAGAAGAATTTCTGCAAGCCCAATAT
GGAGTATGTTTTATATTAGTACTCCCATATCAACCAATGTGACAGGTACAACTCTTAATTGCCACTTTGATAATTTTATT
TGTTGCACTCTGGNCCACCATTTTNNNTANTNGCTTCAGTGAAAGTCGGCTGGGGTTCTGTTGACCAGATCTTGATTTTC
TGAATGATAAATGTCACAATAGATTCTGTCTTGTTCTTGCTTAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis