Browse Element(s) Details


Os.26440.1.S1_at

Description gb:AK099772.1
DB_XREF= gi:32984981
TID=Os.26440.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095D24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095D24, full insert sequence.
FL= gb:AK099772.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1165011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11614OsAffx.12827.1.S1_at11/113+6031896..6040482Developmental protein SEPALLATA1, putative, expressed
LOC_Os03g11614Os.10941.1.S1_at11/113+6031896..6040482Developmental protein SEPALLATA1, putative, expressed
LOC_Os03g11630NANA3+6045450..6048406transposon protein, putative, Mutator sub-class
LOC_Os03g11640OsAffx.3201.1.S1_at10/113+6050497..6052266hypothetical protein
LOC_Os03g11650Os.26440.1.S1_at11/113+6058276..6063592expressed protein
LOC_Os03g11660Os.53195.1.A1_at11/113+6064755..6068165Pyridoxal-phosphate dependent enzyme family protein, expressed
LOC_Os03g11670OsAffx.7711.1.S1_at1/113+6068365..6070632RSP67.2, putative, expressed
LOC_Os03g11680Os.56307.1.S1_at11/113+6077548..6079456zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0005874cellular_componentmicrotubule
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26440.1.S1_at--359--7911Chr03:6062916..6062940 (25 bp)
GGTTGCCTTTTGGATTGTGGATAAT
LOC_Os03g11650
Os.26440.1.S1_at--430--9891Chr03:6062961..6063141 (25 bp)
TACTTACCATGTACAGATGCATCAT
LOC_Os03g11650
Os.26440.1.S1_at--1153--631Chr03:6063133..6063157 (25 bp)
ATGCATCATTGCGACTTATTTGAAA
LOC_Os03g11650
Os.26440.1.S1_at--865--10711Chr03:6063152..6063176 (25 bp)
TTGAAAAGCGTGTGAGCCTCTCTGA
LOC_Os03g11650
Os.26440.1.S1_at--344--5871Chr03:6063165..6063189 (25 bp)
GAGCCTCTCTGAAGCTTTCTTCAAT
LOC_Os03g11650
Os.26440.1.S1_at--43--2151Chr03:6063217..6063241 (25 bp)
ACAGAACCGGCAATGGTCTTCGTCT
LOC_Os03g11650
Os.26440.1.S1_at--904--7811Chr03:6063231..6063255 (25 bp)
GGTCTTCGTCTTTGTTATATCTTGT
LOC_Os03g11650
Os.26440.1.S1_at--414--3071Chr03:6063263..6063287 (25 bp)
AATCATGCCATAAGCTTCACAAGTG
LOC_Os03g11650
Os.26440.1.S1_at--824--7351Chr03:6063400..6063424 (25 bp)
GTGAAGGGTGTTTCTCTTAATTGTT
LOC_Os03g11650
Os.26440.1.S1_at--296--3451Chr03:6063494..6063518 (25 bp)
CAGTAATTTTCGTGTGTTCGCGCAG
LOC_Os03g11650
Os.26440.1.S1_at--575--7411Chr03:6063507..6063531 (25 bp)
GTGTTCGCGCAGGTTAACTACAAGT
LOC_Os03g11650
Target Sequence 
GGTTGCCTTTTGGATTGTGGATAATGCATAATAGAAAACAGATGGTACTTACCATGTACAGATGCATCATTGCGACTTAT
TTGAAAAGCGTGTGAGCCTCTCTGAAGCTTTCTTCAATANTTTAGTTTTGGAGATTATTTGGACAACAGAACCGGCAATG
GTCTTCGTCTTTGTTATATCTTGTACATATAAATCATGCCATAAGCTTCACAAGTGCATTTTGTGCCTGTAAAAAAACAG
ATTCAATTTGTAGTGTTTTGAGGAAAGGTNNNGNTTCATTAAATAAAGAAAGTTGNTGCAATGTAACAAAAATGCAAATA
GAAATATAAGTGAAGGGTGTTTCTCTTAATTGTTTTTTTTTTGTTTCAGATGTTCCAGATTTTTTTTTTGGCAAAGAATT
GTTCCAGAATTATTGCTACAAGTCAGTAATTTTCGTGTGTTCGCGCAGGTTAACTACAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis