Browse Element(s) Details


OsAffx.12827.1.S1_at

Description tigr:9631.m01080
TID=OsAffx.12827.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to MADS box protein - rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1161411/11Developmental protein SEPALLATA1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11600Os.49773.1.S1_at10/113+6020360..6027796Drooping leaf protein, putative, expressed
LOC_Os03g11614OsAffx.12827.1.S1_at11/113+6031896..6040482Developmental protein SEPALLATA1, putative, expressed
LOC_Os03g11614Os.10941.1.S1_at11/113+6031896..6040482Developmental protein SEPALLATA1, putative, expressed
LOC_Os03g11630NANA3+6045450..6048406transposon protein, putative, Mutator sub-class
LOC_Os03g11640OsAffx.3201.1.S1_at10/113+6050497..6052266hypothetical protein
LOC_Os03g11650Os.26440.1.S1_at11/113+6058276..6063592expressed protein
LOC_Os03g11660Os.53195.1.A1_at11/113+6064755..6068165Pyridoxal-phosphate dependent enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009908biological_processflower development
GO:0010076biological_processmaintenance of floral meristem identity
GO:0010093biological_processspecification of floral organ identity
GO:0048440biological_processcarpel development
GO:0048441biological_processpetal development
GO:0048442biological_processsepal development
GO:0048443biological_processstamen development
GO:0048481biological_processovule development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12827.1.S1_at--243--9611Chr03:6040035..6040139 (25 bp)
TCATCATGTGAAACACTCGTCGATC
LOC_Os03g11614
OsAffx.12827.1.S1_at--51--3571Chr03:6040034..6040138 (25 bp)
CATCATGTGAAACACTCGTCGATCT
LOC_Os03g11614
OsAffx.12827.1.S1_at--228--2171Chr03:6040023..6040047 (25 bp)
ACACTCGTCGATCTGAGGGAAAATC
LOC_Os03g11614
OsAffx.12827.1.S1_at--340--3331Chr03:6040022..6040046 (25 bp)
CACTCGTCGATCTGAGGGAAAATCC
LOC_Os03g11614
OsAffx.12827.1.S1_at--905--1991Chr03:6040021..6040045 (25 bp)
ACTCGTCGATCTGAGGGAAAATCCG
LOC_Os03g11614
OsAffx.12827.1.S1_at--212--3791Chr03:6040020..6040044 (25 bp)
CTCGTCGATCTGAGGGAAAATCCGG
LOC_Os03g11614
OsAffx.12827.1.S1_at--728--9411Chr03:6040019..6040043 (25 bp)
TCGTCGATCTGAGGGAAAATCCGGT
LOC_Os03g11614
OsAffx.12827.1.S1_at--697--7211Chr03:6040017..6040041 (25 bp)
GTCGATCTGAGGGAAAATCCGGTCG
LOC_Os03g11614
OsAffx.12827.1.S1_at--326--4051Chr03:6040015..6040039 (25 bp)
CGATCTGAGGGAAAATCCGGTCGAG
LOC_Os03g11614
OsAffx.12827.1.S1_at--987--471Chr03:6040013..6040037 (25 bp)
ATCTGAGGGAAAATCCGGTCGAGAT
LOC_Os03g11614
OsAffx.12827.1.S1_at--611--9411Chr03:6040012..6040036 (25 bp)
TCTGAGGGAAAATCCGGTCGAGATC
LOC_Os03g11614
Target Sequence 
TCATCATGTGAAACACTCGTCGATCTGAGGGAAAATCCGGTCGAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis