Browse Element(s) Details


OsAffx.3201.1.S1_at

Description tigr:9631.m01082
TID=OsAffx.3201.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1164010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11600Os.49773.1.S1_at10/113+6020360..6027796Drooping leaf protein, putative, expressed
LOC_Os03g11614OsAffx.12827.1.S1_at11/113+6031896..6040482Developmental protein SEPALLATA1, putative, expressed
LOC_Os03g11614Os.10941.1.S1_at11/113+6031896..6040482Developmental protein SEPALLATA1, putative, expressed
LOC_Os03g11630NANA3+6045450..6048406transposon protein, putative, Mutator sub-class
LOC_Os03g11640OsAffx.3201.1.S1_at10/113+6050497..6052266hypothetical protein
LOC_Os03g11650Os.26440.1.S1_at11/113+6058276..6063592expressed protein
LOC_Os03g11660Os.53195.1.A1_at11/113+6064755..6068165Pyridoxal-phosphate dependent enzyme family protein, expressed
LOC_Os03g11670OsAffx.7711.1.S1_at1/113+6068365..6070632RSP67.2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3201.1.S1_at--248--6351Chr03:6052212..6052236 (25 bp)
GATGCTGAAGACATGAAAGGTGCCA
LOC_Os03g11640
OsAffx.3201.1.S1_at--817--5651Chr03:6052203..6052227 (25 bp)
GACATGAAAGGTGCCAGCCAGCTCA
LOC_Os03g11640
OsAffx.3201.1.S1_at--876--671Chr03:6052200..6052224 (25 bp)
ATGAAAGGTGCCAGCCAGCTCAAGG
LOC_Os03g11640
OsAffx.3201.1.S1_at--824--4411Chr03:6052187..6052211 (25 bp)
GCCAGCTCAAGGATACAAATTTTTT
LOC_Os03g11640
OsAffx.3201.1.S1_at--530--7951NONE
GGATACAAATTGTCTGCTGAACTGG
NONE
OsAffx.3201.1.S1_at--839--7171Chr03:6051467..6051487 (21 bp)
GTCTGCTGAACTGGAAAGTTCTCAC
LOC_Os03g11640
OsAffx.3201.1.S1_at--378--8151Chr03:6051455..6051479 (25 bp)
GGAAAGTTCTCACAGAAATCTGATA
LOC_Os03g11640
OsAffx.3201.1.S1_at--485--5591Chr03:6051441..6051465 (25 bp)
GAAATCTGATACGTAGCATATGGTT
LOC_Os03g11640
OsAffx.3201.1.S1_at--1101--6951Chr03:6051429..6051453 (25 bp)
GTAGCATATGGTTTTGGACACATCA
LOC_Os03g11640
OsAffx.3201.1.S1_at--774--8511Chr03:6051415..6051439 (25 bp)
TGGACACATCAAGGAGGACCATACA
LOC_Os03g11640
OsAffx.3201.1.S1_at--643--9851Chr03:6050532..6050551 (20 bp)
TACAAAGCTGAACTTGGTGCACTGG
LOC_Os03g11640
Target Sequence 
GATGCTGAAGACATGAAAGGTGCCAGCCAGCTCAAGGATACAAATTTTTTGAACGACGAAAAAGGATACAAATTGTCTGC
TGAACTGGAAAGTTCTCACAGAAATCTGATACGTAGCATATGGTTTTGGACACATCAAGGAGGACCATACAAAGCTGAAC
TTGGTGCACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis