Browse Element(s) Details


Os.53195.1.A1_at

Description gb:AK071308.1
DB_XREF= gi:32981331
TID=Os.53195.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53195 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083K22, full insert sequence.
FL= gb:AK071308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1166011/11Pyridoxal-phosphate dependent enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11614OsAffx.12827.1.S1_at11/113+6031896..6040482Developmental protein SEPALLATA1, putative, expressed
LOC_Os03g11614Os.10941.1.S1_at11/113+6031896..6040482Developmental protein SEPALLATA1, putative, expressed
LOC_Os03g11630NANA3+6045450..6048406transposon protein, putative, Mutator sub-class
LOC_Os03g11640OsAffx.3201.1.S1_at10/113+6050497..6052266hypothetical protein
LOC_Os03g11650Os.26440.1.S1_at11/113+6058276..6063592expressed protein
LOC_Os03g11660Os.53195.1.A1_at11/113+6064755..6068165Pyridoxal-phosphate dependent enzyme family protein, expressed
LOC_Os03g11670OsAffx.7711.1.S1_at1/113+6068365..6070632RSP67.2, putative, expressed
LOC_Os03g11680Os.56307.1.S1_at11/113+6077548..6079456zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006520biological_processamino acid metabolism
GO:0006535biological_processcysteine biosynthesis from serine
GO:0019344biological_processcysteine biosynthesis
GO:0005829cellular_componentcytosol
GO:0004124molecular_functioncysteine synthase activity
GO:0016829molecular_functionlyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53195.1.A1_at--172--6731Chr03:6067570..6067594 (25 bp)
GTTCTTCAGCCATGAATTGTGTTGG
LOC_Os03g11660
Os.53195.1.A1_at--440--7411Chr03:6067588..6067612 (25 bp)
GTGTTGGTGCTGTAAGAGTTGCTCA
LOC_Os03g11660
Os.53195.1.A1_at--90--6071Chr03:6067603..6067627 (25 bp)
GAGTTGCTCAAGATTTAGGTCCAGG
LOC_Os03g11660
Os.53195.1.A1_at--888--10511Chr03:6067698..6067722 (25 bp)
TTGGCTAACCATGGCCTGACACCAA
LOC_Os03g11660
Os.53195.1.A1_at--623--7611Chr03:6067767..6067791 (25 bp)
GGGAATATACAGTCTCAGCAAGTTT
LOC_Os03g11660
Os.53195.1.A1_at--633--1211Chr03:6067787..6067811 (25 bp)
AGTTTTTCATGATGTGATGTCTGCC
LOC_Os03g11660
Os.53195.1.A1_at--984--751Chr03:6067803..6067827 (25 bp)
ATGTCTGCCCTGATAGCTGGTGAAT
LOC_Os03g11660
Os.53195.1.A1_at--434--7351Chr03:6067822..6067846 (25 bp)
GTGAATACTGACGAGCTGGAACATA
LOC_Os03g11660
Os.53195.1.A1_at--870--7171Chr03:6067903..6067927 (25 bp)
GTCGTACGGCTTTAAGTTATCCTCA
LOC_Os03g11660
Os.53195.1.A1_at--65--8351Chr03:6067975..6067999 (25 bp)
GGCTGGTATAGCCAAACCTGCATTT
LOC_Os03g11660
Os.53195.1.A1_at--661--1691Chr03:6067984..6068008 (25 bp)
AGCCAAACCTGCATTTCTTGTAGTT
LOC_Os03g11660
Target Sequence 
GTTCTTCAGCCATGAATTGTGTTGGTGCTGTAAGAGTTGCTCAAGATTTAGGTCCAGGACATACAATTGTGACAATTNTC
TGTGACAGTGGGATGAGGCATCTAAGTAAGTTNTTCAATGACCAATATTTGGCTAACCATGGCCTGACACCAACAGCTAC
CGGTNTGGAATTTNTTGATTGATGAGAAAATTTCATGGGGAATATACAGTCTCAGCAAGTTTTTCATGATGTGATGTCTG
CCCTGATAGCTGGTGAATACTGACGAGCTGGAACATAGCAGATNTCATCCAGCAAGAGAACTGCTTGCATNTNTGGATTG
GTACAAAAATTTTGTCGTACGGCTTTAAGTTATCCTCAAAATACATTGTGATGTATTTTAATTAGCTGGCATTGCCATTG
ATAGGGGCTGGTATAGCCAAACCTGCATTTCTTGTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53195.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis