Browse Element(s) Details


Os.49773.1.S1_at

Description gb:AY494713.1
DB_XREF= gi:40362872
GEN=DL
TID=Os.49773.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49773 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) drooping leaf (DL) mRNA, complete cds.
PROD=drooping leaf
FL= gb:AB106553.1 gb:AY494713.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1160010/11Drooping leaf protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11590Os.8125.1.S1_x_at11/113+5992253..5996314integral membrane family protein, putative, expressed
LOC_Os03g11600Os.49773.1.S1_at10/113+6020360..6027796Drooping leaf protein, putative, expressed
LOC_Os03g11614OsAffx.12827.1.S1_at11/113+6031896..6040482Developmental protein SEPALLATA1, putative, expressed
LOC_Os03g11614Os.10941.1.S1_at11/113+6031896..6040482Developmental protein SEPALLATA1, putative, expressed
LOC_Os03g11630NANA3+6045450..6048406transposon protein, putative, Mutator sub-class
LOC_Os03g11640OsAffx.3201.1.S1_at10/113+6050497..6052266hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009909biological_processregulation of flower development
GO:0009933biological_processmeristem organization
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0010154biological_processfruit development
GO:0010158biological_processabaxial cell fate specification
GO:0010254biological_processnectary development
GO:0045165biological_processcell fate commitment
GO:0045449biological_processregulation of transcription
GO:0048440biological_processcarpel development
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49773.1.S1_at--566--9331Chr03:6021415..6021435 (21 bp)
TCGCGGTTGGAGTCCCATGCAAGAG
LOC_Os03g11600
Os.49773.1.S1_at--4--2171Chr03:6021444..6021468 (25 bp)
ACACCGTGACCGTGAAATGTGGCCA
LOC_Os03g11600
Os.49773.1.S1_at--988--5571Chr03:6021457..6021481 (25 bp)
GAAATGTGGCCACTGCAACAACCTC
LOC_Os03g11600
Os.49773.1.S1_at--534--11NONE
TTGGGCCCGTTTCAGGGACCTTGCA
NONE
Os.49773.1.S1_at--969--8091Chr03:6022542..6022566 (25 bp)
GGACCTTGCACTGACTGCAGGAGGA
LOC_Os03g11600
Os.49773.1.S1_at--174--4731Chr03:6022580..6022604 (25 bp)
GCTGGTCTCGCCGACATCAAATGAG
LOC_Os03g11600
Os.49773.1.S1_at--878--2771Chr03:6022613..6022635 (23 bp)
AAGAGCACCCTTCGTTGTGAAGCCC
LOC_Os03g11600
Os.49773.1.S1_at--324--471Chr03:6022959..6022983 (25 bp)
ATCTGCTTACAACCGCTTCATGAGG
LOC_Os03g11600
Os.49773.1.S1_at--103--4651Chr03:6026823..6026847 (25 bp)
GCGTATCAAAGCTGCCAAGCCAGAT
LOC_Os03g11600
Os.49773.1.S1_at--225--1671Chr03:6027145..6027169 (25 bp)
AGCCCAGAGTAGTAGCTGCTCCCAT
LOC_Os03g11600
Os.49773.1.S1_at--367--6011Chr03:6027431..6027455 (25 bp)
GAGAGCTTCGACATCTTCAAGCAGA
LOC_Os03g11600
Target Sequence 
TCGCGGTTGGAGTCCCATGCAAGAGGCTGATGGACACCGTGACCGTGAAATGTGGCCACTGCAACAACCTCTCCTTCCTC
AGCCCGCGGCCGCCGATGGTGCAGCCGCTCTCCCCAACTGATCACCCCTTGGGCCCGTTTCAGGGACCTTGCACTGACTG
CAGGAGGAACCAGCCGCTGCCGCTGGTCTCGCCGACATCAAATGAGGGTAGCCCAAGAGCACCCTTCGTTGTGAAGCCCC
CAGAGAAGAAACACCGCCTCCCATCTGCTTACAACCGCTTCATGAGGGAGGAAATACAGCGTATCAAAGCTGCCAAGCCA
GATATCCCTCACAGGGAGGCCTTCAGCATGGCTGCCAAGAACTGGGCGAAGTGCGACCCCCGCTGCTCATCGACGGTTTC
CACCTCCAACAGCAACCCCGAGCCCAGAGTAGTAGCTGCTCCCATTCCTCATCAGGAGAGGGCCAACGAGCAGGTGGTCG
AGAGCTTCGACATCTTCAAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis