Browse Element(s) Details


Os.26444.1.S1_at

Description gb:AK100605.1
DB_XREF= gi:32985814
TID=Os.26444.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107G12, full insert sequence.
FL= gb:AK100605.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0791011/11Endomembrane protein 70 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07890Os.47463.1.S1_x_at6/1111+4045483..4056555transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g07890Os.14491.2.S1_x_at4/1111+4045483..4056555transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g07890Os.57514.1.S1_x_at2/1111+4045483..4056555transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g07900OsAffx.18735.1.S1_at10/1111+4067836..4070066hypothetical protein
LOC_Os11g07910Os.26444.1.S1_at11/1111+4072807..4079376Endomembrane protein 70 containing protein, expressed
LOC_Os11g07916Os.7859.1.S1_at11/1111+4087072..4089566nitrogen fixation protein, putative, expressed
LOC_Os11g07922Os.52255.1.S1_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07922Os.52255.1.S1_x_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07922OsAffx.18738.1.S1_x_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07930Os.25496.1.S1_at11/1111+4093522..4097409oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07940Os.22793.1.S1_at10/1111+4098869..4106094expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006944biological_processmembrane fusion
GO:0009524cellular_componentphragmoplast
GO:0016021cellular_componentintegral to membrane
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26444.1.S1_at--40--612Chr11:4078814..4078838 (25 bp)
ATGCGACTAAATTGCTACTCTGAAC
LOC_Os11g07910
Os.26444.1.S1_at--630--2971Chr11:4078843..4078867 (25 bp)
AATGTGACCAAAGGGCTACTCCGTT
LOC_Os11g07910
Os.26444.1.S1_at--314--9911Chr11:4078859..4078883 (25 bp)
TACTCCGTTGCCGATAGATCCTATC
LOC_Os11g07910
Os.26444.1.S1_at--904--8071Chr11:4079029..4079053 (25 bp)
GGAGCTGGCCTCATAAATGTATACC
LOC_Os11g07910
Os.26444.1.S1_at--1115--3471Chr11:4079063..4079087 (25 bp)
CAGGAATTAGTCTCAGTACCGGGAA
LOC_Os11g07910
Os.26444.1.S1_at--352--10051Chr11:4079095..4079119 (25 bp)
TAGATTCTCATTTTGTGGTGGCCTC
LOC_Os11g07910
Os.26444.1.S1_at--601--3191Chr11:4079170..4079194 (25 bp)
CAATCCAGTGGCTAGAATTGCCCCT
LOC_Os11g07910
Os.26444.1.S1_at--899--3151Chr11:4079185..4079209 (25 bp)
AATTGCCCCTCTTATGAATCGCTAT
LOC_Os11g07910
Os.26444.1.S1_at--1134--5251Chr11:4079200..4079224 (25 bp)
GAATCGCTATACATCCAATTTTGGC
LOC_Os11g07910
Os.26444.1.S1_at--260--7711Chr11:4079282..4079306 (25 bp)
GGGTGAAGTTCTATTTCTTCCCCTG
LOC_Os11g07910
Os.26444.1.S1_at--677--10451Chr11:4079345..4079369 (25 bp)
TTAGCCTTTGGTCTGAGTTTTCATC
LOC_Os11g07910
Target Sequence 
ATGCGACTAAATTGCTACTCTGAACATCAAATGTGACCAAAGGGCTACTCCGTTGCCGATAGATCCTATCAGCGAAGTGT
GTGTTGCTGGCGCAGGTCCATTGTGGAGTAATGCTCATAAGATTCTGATCAACTTTTGGAAGCTATACAGGAGATTGTTC
TCCCTTTGTTTTACCTTTTCTTTTTATGTTTTTCTTTTACTTCATTTTTCTTCTTGGAGCTGGCCTCATAAATGTATACC
TCATTAGTTCAGGAATTAGTCTCAGTACCGGGAAGTACATTTAGATTCTCATTTTGTGGTGGCCTCTTTTGGCCAGTAGT
AGGATATCATTGATGAATATTGGTGCAGTGTGGATCCAATCCAGTGGCTAGAATTGCCCCTCTTATGAATCGCTATACAT
CCAATTTTGGCATAGCCTTGTAGTATATGCAAACTAATACATTCAAGTTAGATATATATGGCCTGAATGGGTGAAGTTCT
ATTTCTTCCCCTGCAGGTACTGTTGAAACATGAATTCGACATGATTATTATTTAGCCTTTGGTCTGAGTTTTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis