Browse Element(s) Details


Os.52255.1.S1_x_at

Description gb:AK065928.1
DB_XREF= gi:32975946
TID=Os.52255.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044J03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044J03, full insert sequence.
FL= gb:AK065928.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0792211/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07900OsAffx.18735.1.S1_at10/1111+4067836..4070066hypothetical protein
LOC_Os11g07910Os.26444.1.S1_at11/1111+4072807..4079376Endomembrane protein 70 containing protein, expressed
LOC_Os11g07916Os.7859.1.S1_at11/1111+4087072..4089566nitrogen fixation protein, putative, expressed
LOC_Os11g07922Os.52255.1.S1_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07922Os.52255.1.S1_x_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07922OsAffx.18738.1.S1_x_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07930Os.25496.1.S1_at11/1111+4093522..4097409oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07940Os.22793.1.S1_at10/1111+4098869..4106094expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009706cellular_componentchloroplast inner membrane
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52255.1.S1_x_at--241--7471Chr11:4092253..4092277 (25 bp)
GTGTGGATATATCACCCCTTGGGAA
LOC_Os11g07922
Os.52255.1.S1_x_at--159--2251Chr11:4092324..4092348 (25 bp)
AAATTCCCTGCATCCTGGAGTGATC
LOC_Os11g07922
Os.52255.1.S1_x_at--327--3111Chr11:4092355..4092379 (25 bp)
AATATCACTCGTTATGTCGTCACAA
LOC_Os11g07922
Os.52255.1.S1_x_at--798--1631Chr11:4092463..4092486 (24 bp)
AGCGTGATGGTTTCAATCCTTTCTG
LOC_Os11g07922
Os.52255.1.S1_x_at--461--3671Chr11:4092480..4092504 (25 bp)
CTTTCTGTGGGAAACCTCTTTCTGA
LOC_Os11g07922
Os.52255.1.S1_x_at--829--631Chr11:4092655..4092679 (25 bp)
ATGCTATCTGGCACTGCATCCTGAA
LOC_Os11g07922
Os.52255.1.S1_x_at--389--7991Chr11:4092685..4092709 (25 bp)
GGATGTCTCCGGCAAATACTTCGCG
LOC_Os11g07922
Os.52255.1.S1_x_at--1111--7931Chr11:4092772..4092796 (25 bp)
GGATTTCAGCGAACAGCTCGTGGAT
LOC_Os11g07922
Os.52255.1.S1_x_at--176--4811Chr11:4092787..4092811 (25 bp)
GCTCGTGGATACTAATCGTCGTGGA
LOC_Os11g07922
Os.52255.1.S1_x_at--30--2251Chr11:4092851..4092875 (25 bp)
AAATTCTGAACCTGACCATGTCTCA
LOC_Os11g07922
Os.52255.1.S1_x_at--972--7151Chr11:4092870..4092894 (25 bp)
GTCTCAACCTGAGATCCTTCAGATA
LOC_Os11g07922
Target Sequence 
GTGTGGATATATCACCCCTTGGGAAATAACAATCTTGATTCCATTCAGGAAGAAGGATGTAATTTGACTGCAAATTCCCT
GCATCCTGGAGTGATCCTCACCAATATCACTCGTTATGTCGTCACAAACAGCGTGATGGTTTCAATCCTTTCTGTGGGAA
ACCTCTTTCTGAAGAACACACAACAGGGAGCTGCAACCACATGCTATCTGGCACTGCATCCTGAACTGAAGGATGTCTCC
GGCAAATACTTCGCGGACTGCAAGGAAGCCACGCCGAGGCCTGCTGCGAGAGACGCAGAGCTAGCGAAGAGGCTATGGGA
TTTCAGCGAACAGCTCGTGGATACTAATCGTCGTGGAGAATTCAACAGACAAAAATGACACTGTTTAGACTGTCTGAAAT
TCTGAACCTGACCATGTCTCAACCTGAGATCCTTCAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52255.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis