Browse Element(s) Details


Os.7859.1.S1_at

Description gb:AK067601.1
DB_XREF= gi:32977619
TID=Os.7859.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108O03, full insert sequence.
FL= gb:AK060074.1 gb:AK067601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0791611/11nitrogen fixation protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07900OsAffx.18735.1.S1_at10/1111+4067836..4070066hypothetical protein
LOC_Os11g07910Os.26444.1.S1_at11/1111+4072807..4079376Endomembrane protein 70 containing protein, expressed
LOC_Os11g07916Os.7859.1.S1_at11/1111+4087072..4089566nitrogen fixation protein, putative, expressed
LOC_Os11g07922Os.52255.1.S1_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07922Os.52255.1.S1_x_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07922OsAffx.18738.1.S1_x_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07930Os.25496.1.S1_at11/1111+4093522..4097409oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07940Os.22793.1.S1_at10/1111+4098869..4106094expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009658biological_processchloroplast organization and biogenesis
GO:0016226biological_processiron-sulfur cluster assembly
GO:0009507cellular_componentchloroplast
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7859.1.S1_at--258--8711Chr11:4089277..4089301 (25 bp)
TGTCCAGCTATTGTCGTAAGCCTGA
LOC_Os11g07916
Os.7859.1.S1_at--335--7211Chr11:4089289..4089313 (25 bp)
GTCGTAAGCCTGAAAACATTTAGAA
LOC_Os11g07916
Os.7859.1.S1_at--788--1431Chr11:4089304..4089328 (25 bp)
ACATTTAGAAAACAACCCCTGCAAT
LOC_Os11g07916
Os.7859.1.S1_at--40--1811Chr11:4089318..4089342 (25 bp)
ACCCCTGCAATGTAAATGTGCCGCT
LOC_Os11g07916
Os.7859.1.S1_at--789--8691Chr11:4089334..4089358 (25 bp)
TGTGCCGCTACAATAATCGCCAGGA
LOC_Os11g07916
Os.7859.1.S1_at--249--771Chr11:4089368..4089392 (25 bp)
ATGGGCTTAAAGCTTTGTAACCTGT
LOC_Os11g07916
Os.7859.1.S1_at--1119--10791Chr11:4089382..4089406 (25 bp)
TTGTAACCTGTTACTCTATTCTACT
LOC_Os11g07916
Os.7859.1.S1_at--1126--7411Chr11:4089448..4089472 (25 bp)
GTGTTCCTACTGGATTTATTTACAA
LOC_Os11g07916
Os.7859.1.S1_at--110--2151Chr11:4089469..4089493 (25 bp)
ACAAAAGGTTTTGGGCTTCTATGAT
LOC_Os11g07916
Os.7859.1.S1_at--253--731Chr11:4089489..4089514 (25 bp)
ATGATTTTGTCTGTACATTTGTGAA
LOC_Os11g07916
Os.7859.1.S1_at--882--8671Chr11:4089509..4089533 (25 bp)
TGTGAATATCACTCTTTTATTTGGA
LOC_Os11g07916
Target Sequence 
TGTCCAGCTATTGTCGTAAGCCTGAAAACATTTAGAAAACAACCCCTGCAATGTAAATGTGCCGCTACAATAATCGCCAG
GAAAGATTGTAATGGGCTTAAAGCTTTGTAACCTGTTACTCTATTCTACTTGAACTACGAATAGTGATCATCAATATGAA
ATGTTGTAAGGGTGTTCCTACTGGATTTATTTACAAAAGGTTTTGGGCTTCTATGATTTTGTCTGTACATTTGTGAATAT
CACTCTTTTATTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis