Browse Element(s) Details


OsAffx.18738.1.S1_x_at

Description tigr:9639.m00732
TID=OsAffx.18738.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0792211/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07900OsAffx.18735.1.S1_at10/1111+4067836..4070066hypothetical protein
LOC_Os11g07910Os.26444.1.S1_at11/1111+4072807..4079376Endomembrane protein 70 containing protein, expressed
LOC_Os11g07916Os.7859.1.S1_at11/1111+4087072..4089566nitrogen fixation protein, putative, expressed
LOC_Os11g07922Os.52255.1.S1_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07922Os.52255.1.S1_x_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07922OsAffx.18738.1.S1_x_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07930Os.25496.1.S1_at11/1111+4093522..4097409oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07940Os.22793.1.S1_at10/1111+4098869..4106094expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009706cellular_componentchloroplast inner membrane
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18738.1.S1_x_at--187--7271Chr11:4091560..4091584 (25 bp)
GTGCCCTTTCAAGCTATCCAAGGAT
LOC_Os11g07922
OsAffx.18738.1.S1_x_at--770--6591Chr11:4091587..4091611 (25 bp)
GATTGAGCTGCAGTTCGCAACGAAT
LOC_Os11g07922
OsAffx.18738.1.S1_x_at--1111--5231Chr11:4091608..4091716 (25 bp)
GAATCATGTCGGTCATTTCTTGCTT
LOC_Os11g07922
OsAffx.18738.1.S1_x_at--186--3631Chr11:4091710..4091734 (25 bp)
CTTGCTTACAAATCTTCTGCTCGAC
LOC_Os11g07922
OsAffx.18738.1.S1_x_at--710--5451Chr11:4091782..4091806 (25 bp)
GAACGTATCGTCTATTGCGCACAAG
LOC_Os11g07922
OsAffx.18738.1.S1_x_at--784--7391Chr11:4091811..4091835 (25 bp)
GTGATGGTTCTTGCTTTGATCTGAA
LOC_Os11g07922
OsAffx.18738.1.S1_x_at--568--7151Chr11:4091851..4091875 (25 bp)
GTCTAGGTCAGCAATGTGTTCATTT
LOC_Os11g07922
OsAffx.18738.1.S1_x_at--30--4671Chr11:4092463..4092487 (25 bp)
GCGTGATGGTTTCAATCCTTTCTGT
LOC_Os11g07922
OsAffx.18738.1.S1_x_at--462--3671Chr11:4092480..4092504 (25 bp)
CTTTCTGTGGGAAACCTCTTTCTGA
LOC_Os11g07922
OsAffx.18738.1.S1_x_at--830--631Chr11:4092655..4092679 (25 bp)
ATGCTATCTGGCACTGCATCCTGAA
LOC_Os11g07922
OsAffx.18738.1.S1_x_at--388--7991Chr11:4092685..4092709 (25 bp)
GGATGTCTCCGGCAAATACTTCGCG
LOC_Os11g07922
Target Sequence 
GTGCCCTTTCAAGCTATCCAAGGATGGGATTGAGCTGCAGTTCGCAACGAATCATGTCGGTCATTTCTTGCTTACAAATC
TTCTGCTCGACAAGATGAAATCGACGGCTAGGAAGACCGGCGTGCAGGGCAGGATCGTGAACGTATCGTCTATTGCGCAC
AAGAGAAGTGATGGTTCTTGCTTTGATCTGAACAAGCTAAACGATAAGTCTAGGTCAGCAATGTGTTCATTTTTATTGTT
ACCGCGTACATTATCACAATGCGTGATGGTTTCAATCCTTTCTGTGGGAAACCTCTTTCTGAAGAACACACAACAGGGAG
CTGCAACCACATGCTATCTGGCACTGCATCCTGAACTGAAGGATGTCTCCGGCAAATACTTCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18738.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis