Browse Element(s) Details


Os.26499.1.S1_at

Description gb:AK105700.1
DB_XREF= gi:32990909
TID=Os.26499.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26499 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-D06, full insert sequence.
FL= gb:AK105700.1 gb:AK062598.1 gb:AK066856.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4571011/11ferredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45680NANA3+25729214..25731012retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g45690NANA3+25745066..25745896hypothetical protein
LOC_Os03g45700OsAffx.1197.1.S1_x_at4/113+25749851..25750207retrotransposon protein, putative, unclassified
LOC_Os03g45700OsAffx.9790.1.S1_x_at1/113+25749851..25750207retrotransposon protein, putative, unclassified
LOC_Os03g45710Os.26499.1.S1_at11/113+25754553..25755391ferredoxin family protein, expressed
LOC_Os03g45720OsAffx.25566.1.S1_at11/113+25755754..25758585glyoxalase family protein, expressed
LOC_Os03g45720Os.17364.1.S1_at11/113+25755754..25758585glyoxalase family protein, expressed
LOC_Os03g45730Os.14665.1.S1_at11/113+25759470..25764976Zinc knuckle family protein, expressed
LOC_Os03g45734OsAffx.7165.1.S1_at1/113+25774916..25776938retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009416biological_processresponse to light stimulus
GO:0009767biological_processphotosynthetic electron transport
GO:0009570cellular_componentchloroplast stroma
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26499.1.S1_at--1090--1371Chr03:25754836..25754860 (25 bp)
AGACCATCCTGTCGCGGGCGCTCGA
LOC_Os03g45710
Os.26499.1.S1_at--744--6131Chr03:25754862..25754886 (25 bp)
GAGGGCATCGACGTGCCGCACGACT
LOC_Os03g45710
Os.26499.1.S1_at--838--1371Chr03:25754944..25754968 (25 bp)
AGAGCGACGGCATGCTCAGCGACGA
LOC_Os03g45710
Os.26499.1.S1_at--1126--4631Chr03:25755031..25755055 (25 bp)
GCGTCATCCCCGAGGACGAGCTGCT
LOC_Os03g45710
Os.26499.1.S1_at--422--8371Chr03:25755121..25755145 (25 bp)
GGCGTGTGTGTCATCTCCGGCTAGC
LOC_Os03g45710
Os.26499.1.S1_at--253--9231Chr03:25755136..25755160 (25 bp)
TCCGGCTAGCTTGTACAACTTTTTT
LOC_Os03g45710
Os.26499.1.S1_at--659--10631Chr03:25755159..25755183 (25 bp)
TTCCCCTCAAGTGGTATTTCCCGAG
LOC_Os03g45710
Os.26499.1.S1_at--273--7871Chr03:25755171..25755195 (25 bp)
GGTATTTCCCGAGATATTTGTGACA
LOC_Os03g45710
Os.26499.1.S1_at--879--211Chr03:25755186..25755210 (25 bp)
ATTTGTGACAATTGCTCCTTTGCCT
LOC_Os03g45710
Os.26499.1.S1_at--1113--9231Chr03:25755201..25755225 (25 bp)
TCCTTTGCCTAGCTAGTTGTTTCAG
LOC_Os03g45710
Os.26499.1.S1_at--737--191Chr03:25755285..25755309 (25 bp)
ATTTCTATCTTTTTCATATTCTAAG
LOC_Os03g45710
Target Sequence 
AGACCATCCTGTCGCGGGCGCTCGACGAGGGCATCGACGTGCCGCACGACTGCAAGCTCGGCGTGTGCATGACGTGCCCG
GCGCGCCTCGTCGCCGGCGAGGTGGACCAGAGCGACGGCATGCTCAGCGACGACGTCGTGGCGCAGGGCTACGCGCTGCT
CTGCGCCTCCTACCCGCGCTCCGACTGCACCATCCGCGTCATCCCCGAGGACGAGCTGCTCAAGGTCCAGCTCGCCACCG
CCGACGACTGAGGCACATCGCGCGCCCGCCGCCGCCGCCGTCGCCGGCGTGTGTGTCATCTCCGGCTAGCTTGTACAACT
TTTTTCCCCTCAAGTGGTATTTCCCGAGATATTTGTGACAATTGCTCCTTTGCCTAGCTAGTTGTTTCAGTTGTGATAAT
GTAGTATCTACTATTTTTGTTTTAAGCATTATGTAGGATACATAGTATTATTTCTATCTTTTTCATATTCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis