Browse Element(s) Details


Os.26502.1.S1_a_at

Description gb:AB114855.1
DB_XREF= gi:32879780
TID=Os.26502.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.26502 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for stromal ascorbate peroxidase, complete cds.
PROD=stromal ascorbate peroxidase
FL= gb:AB114855.1 gb:AK103344.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3552011/11L-ascorbate peroxidase 7, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35500NANA4+21413253..21414522ZF-HD protein dimerisation region containing protein, expressed
LOC_Os04g35510Os.36698.1.S1_at11/114+21422013..21424151CENP-E-like kinetochore protein, putative, expressed
LOC_Os04g35510OsAffx.14157.1.S1_at11/114+21422013..21424151CENP-E-like kinetochore protein, putative, expressed
LOC_Os04g35520Os.26502.1.S1_a_at11/114+21435571..21439929L-ascorbate peroxidase 7, chloroplast precursor, putative, expressed
LOC_Os04g35530OsAffx.14158.1.S1_at11/114+21442184..21446637hypothetical protein
LOC_Os04g35540Os.52648.1.S1_at11/114+21450403..21455206Amino acid permease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0009408biological_processresponse to heat
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0004601molecular_functionperoxidase activity
GO:0016688molecular_functionL-ascorbate peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26502.1.S1_a_at--172--9791Chr04:21436662..21436685 (24 bp)
TAAGAATGGCCCTGGTGCACCTGGT
LOC_Os04g35520
Os.26502.1.S1_a_at--638--1771Chr04:21436644..21436668 (25 bp)
ACCTGGTGGGCAATCGTGGACAGCT
LOC_Os04g35520
Os.26502.1.S1_a_at--1049--7811Chr04:21436466..21436490 (25 bp)
GGTCTTGCCTACAGATGCTGCATTA
LOC_Os04g35520
Os.26502.1.S1_a_at--1084--2751Chr04:21436250..21436274 (25 bp)
AAGACTATGCCGGAGCTCATGCTAA
LOC_Os04g35520
Os.26502.1.S1_a_at--280--7691Chr04:21436213..21436237 (25 bp)
GGGTGCAAAATTCAATCCTCCTGAG
LOC_Os04g35520
Os.26502.1.S1_a_at--363--9271Chr04:21435998..21436222 (25 bp)
TCCTCCTGAGGGATTCACGTTGGAC
LOC_Os04g35520
Os.26502.1.S1_a_at--1161--6611Chr04:21435980..21436004 (25 bp)
GTTGGACGGTTAATGCGATGCGCAT
LOC_Os04g35520
Os.26502.1.S1_a_at--116--7551Chr04:21435939..21435963 (25 bp)
GTGGCCAACCACTTTTACAGAAAGG
LOC_Os04g35520
Os.26502.1.S1_a_at--801--9211Chr04:21435735..21435759 (25 bp)
TCCAACGTTGTGTCATCATTCCAGA
LOC_Os04g35520
Os.26502.1.S1_a_at--466--1291Chr04:21435713..21435737 (25 bp)
AGATGAAGCTTTTCCTGACCACGAG
LOC_Os04g35520
Os.26502.1.S1_a_at--592--8911Chr04:21435626..21435650 (25 bp)
TGAGCCGAACTTGCGGACCAAATTC
LOC_Os04g35520
Target Sequence 
TAAGAATGGCCCTGGTGCACCTGGTGGGCAATCGTGGACAGCTGAATGGCTTAAGTTTGATAACAGTTATTTCAAGGAGA
TAAAAGAGAAAAGAGATCAGGATCTCCTGGTCTTGCCTACAGATGCTGCATTATTTGAGGACCCAACATTCAAGGTCTAT
GCAGAAAAATACGCAGAGGACCAAGAAGCATTCTTTAAAGACTATGCCGGAGCTCATGCTAAACTGAGCAATCTGGGTGC
AAAATTCAATCCTCCTGAGGGATTCACGTTGGACGGTTAATGCGATGCGCATGAGCCAGATCGCTGAAGTGGCCAACCAC
TTTTACAGAAAGGATCAAGAGAGAAACACTACACAATCCAATTTCCTGCTCCAACGTTGTGTCATCATTCCAGATGAAGC
TTTTCCTGACCACGAGTCATATTGGATTTGGAAACTGAGTATTCGAATAAAAAAACAGACTGGCTAGAGAGGCAAATTTG
AGCCGAACTTGCGGACCAAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26502.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis