Browse Element(s) Details


Os.52648.1.S1_at

Description gb:AK068521.1
DB_XREF= gi:32978539
TID=Os.52648.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52648 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155C12, full insert sequence.
FL= gb:AK068521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3554011/11Amino acid permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35520Os.26502.1.S1_a_at11/114+21435571..21439929L-ascorbate peroxidase 7, chloroplast precursor, putative, expressed
LOC_Os04g35530OsAffx.14158.1.S1_at11/114+21442184..21446637hypothetical protein
LOC_Os04g35540Os.52648.1.S1_at11/114+21450403..21455206Amino acid permease family protein, expressed
LOC_Os04g35550OsAffx.14159.1.S1_at11/114+21473942..21474390hypothetical protein
LOC_Os04g35560Os.28042.1.S1_a_at11/114+21474698..21476978Glutathione S-transferase, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52648.1.S1_at--923--6691Chr04:21454757..21454781 (25 bp)
GTTCCTGTGGATCTGCTACACCTGC
LOC_Os04g35540
Os.52648.1.S1_at--762--9711Chr04:21454906..21454930 (25 bp)
TCAAGGGACCCGTCAGGAACATCGA
LOC_Os04g35540
Os.52648.1.S1_at--396--5491Chr04:21454922..21454946 (25 bp)
GAACATCGACGATCCTCTGAAAGAT
LOC_Os04g35540
Os.52648.1.S1_at--437--6231Chr04:21454956..21454980 (25 bp)
GATGGCGTCCATAACAATGGCAACA
LOC_Os04g35540
Os.52648.1.S1_at--370--8571Chr04:21454992..21455016 (25 bp)
TGGTTTAGGTTGTTACTGGAGTACT
LOC_Os04g35540
Os.52648.1.S1_at--959--8031Chr04:21455009..21455033 (25 bp)
GGAGTACTTAGTTTGAGCAGATCAT
LOC_Os04g35540
Os.52648.1.S1_at--1100--1511Chr04:21455024..21455048 (25 bp)
AGCAGATCATTAGCTCAAGCCAAAT
LOC_Os04g35540
Os.52648.1.S1_at--499--6451Chr04:21455050..21455074 (25 bp)
GATCACATTCTCGATAGAGTTTTTT
LOC_Os04g35540
Os.52648.1.S1_at--436--9591Chr04:21455083..21455107 (25 bp)
TCTTGTGTTGTCTCCTACTTTGTTG
LOC_Os04g35540
Os.52648.1.S1_at--819--8671Chr04:21455106..21455130 (25 bp)
TGTGTACGTGTACTATTCTGTGACA
LOC_Os04g35540
Os.52648.1.S1_at--55--8051Chr04:21455157..21455181 (25 bp)
GGAGAAAACTTTGTGCCATATAGAA
LOC_Os04g35540
Target Sequence 
GTTCCTGTGGATCTGCTACACCTGCACCGTGTTCCTCCTCCCGACGGCGTACCCGATCAGCGCCGGCAACTTCAACTACG
CCCCCGTCGCGCTCGGCGCCTGCCTCGGCCTCATCGGGCTCTGGTGGGTGCTCGACGCNAGGAGGTGGTTCAAGGGACCC
GTCAGGAACATCGACGATCCTCTGAAAGATGGTGGTGGTGATGGCGTCCATAACAATGGCAACAAGGTCTAAGTATGGTT
TAGGTTGTTACTGGAGTACTTAGTTTGAGCAGATCATTAGCTCAAGCCAAATTGATCACATTCTCGATAGAGTTTTTTTT
TTCCCTCTCTTGTGTTGTCTCCTACTTTGTTGTGTACGTGTACTATTCTGTGACACTATCAATGGGGTTAGTTTAGGATG
TGGAGAAAACTTTGTGCCATATAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis