Browse Element(s) Details


OsAffx.14159.1.S1_at

Description tigr:9632.m03422
TID=OsAffx.14159.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3555011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35540Os.52648.1.S1_at11/114+21450403..21455206Amino acid permease family protein, expressed
LOC_Os04g35550OsAffx.14159.1.S1_at11/114+21473942..21474390hypothetical protein
LOC_Os04g35560Os.28042.1.S1_a_at11/114+21474698..21476978Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os04g35570Os.11752.1.S1_at11/114+21495027..21500744Regulator of chromosome condensation family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14159.1.S1_at--651--3091Chr04:21474329..21474353 (25 bp)
AATACCTTGGAGCTGGAGACCTTGA
LOC_Os04g35550
OsAffx.14159.1.S1_at--244--5991Chr04:21474314..21474338 (25 bp)
GAGACCTTGAACAATTGAGCCTTCT
LOC_Os04g35550
OsAffx.14159.1.S1_at--633--5511Chr04:21474306..21474330 (25 bp)
GAACAATTGAGCCTTCTGGTTTCAG
LOC_Os04g35550
OsAffx.14159.1.S1_at--395--5851Chr04:21474298..21474322 (25 bp)
GAGCCTTCTGGTTTCAGAGTTTCAG
LOC_Os04g35550
OsAffx.14159.1.S1_at--25--6831Chr04:21474280..21474304 (25 bp)
GTTTCAGGACAAGAGTGAGCCAGGA
LOC_Os04g35550
OsAffx.14159.1.S1_at--346--4292Chr04:21474237..21474261 (25 bp)
CCTAAGAGCAGTGGGAATGGGAACA
LOC_Os04g35550
OsAffx.14159.1.S1_at--393--8031Chr04:21474107..21474196 (25 bp)
GGAGGTGGAAATTTGCTCGCACGAT
LOC_Os04g35550
OsAffx.14159.1.S1_at--632--10711Chr04:21474095..21474117 (23 bp)
TTGCTCGCACGATTACTTTAATGGA
LOC_Os04g35550
OsAffx.14159.1.S1_at--20--5511Chr04:21474063..21474087 (25 bp)
GAACACATATTTTGGATAGCTTGAG
LOC_Os04g35550
OsAffx.14159.1.S1_at--1149--10211Chr04:21474053..21474077 (25 bp)
TTTGGATAGCTTGAGATCTTCGAAG
LOC_Os04g35550
OsAffx.14159.1.S1_at--236--9011Chr04:21473975..21473999 (25 bp)
TGAAGGAATGCTTAAGCCCCTCTCC
LOC_Os04g35550
Target Sequence 
AATACCTTGGAGCTGGAGACCTTGAACAATTGAGCCTTCTGGTTTCAGAGTTTCAGGACAAGAGTGAGCCAGGAAGAGGA
AGAAAGAGAGAGCCTAAGAGCAGTGGGAATGGGAACATGGAGGAAAGCCTAAAAACCAAATTTCTTCCTCCAGCAATGGA
GGTGGAAATTTGCTCGCACGATTACTTTAATGGAGAAATTAGAACACATATTTTGGATAGCTTGAGATCTTCGAAGGCGG
GATCGGAAGAGGAAGAAAAGAGGGCCAAGGAGCAGTGGGCATGGGGACATGAAGGAATGCTTAAGCCCCTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis