Browse Element(s) Details


Os.28042.1.S1_a_at

Description gb:AY256683.1
DB_XREF= gi:30060270
TID=Os.28042.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28042 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) putative brown planthopper-inducible protein BpHi006A mRNA, complete cds.
PROD=putative brown planthopper-inducible proteinBpHi006A
FL= gb:AY256683.1 gb:AK100671.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3556011/11Glutathione S-transferase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35540Os.52648.1.S1_at11/114+21450403..21455206Amino acid permease family protein, expressed
LOC_Os04g35550OsAffx.14159.1.S1_at11/114+21473942..21474390hypothetical protein
LOC_Os04g35560Os.28042.1.S1_a_at11/114+21474698..21476978Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os04g35570Os.11752.1.S1_at11/114+21495027..21500744Regulator of chromosome condensation family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28042.1.S1_a_at--828--9131Chr04:21475255..21475279 (25 bp)
TGCGGATTCGGTGTTCATTCCTATC
LOC_Os04g35560
Os.28042.1.S1_a_at--957--1831Chr04:21475225..21475249 (25 bp)
ACGCATCACTCTTTTGGACCTTGAT
LOC_Os04g35560
Os.28042.1.S1_a_at--266--5051Chr04:21475184..21475208 (25 bp)
GCAGACCTAGGTTACTCGAGTACTA
LOC_Os04g35560
Os.28042.1.S1_a_at--1100--6191Chr04:21475144..21475168 (25 bp)
GAGGCCCAGCTACAAGGTTGCAATT
LOC_Os04g35560
Os.28042.1.S1_a_at--478--11Chr04:21475095..21475119 (25 bp)
AAGTACCGAACTCTCTTCAAGACCT
LOC_Os04g35560
Os.28042.1.S1_a_at--843--9891Chr04:21475035..21475059 (25 bp)
TACTAGGTGGTTCAGCAGACAGCAA
LOC_Os04g35560
Os.28042.1.S1_a_at--123--251Chr04:21474987..21475011 (25 bp)
ATATACGACCACTACATCTTGATGT
LOC_Os04g35560
Os.28042.1.S1_a_at--704--6231Chr04:21474938..21474962 (25 bp)
GATGGCTCCTGATAGTTTTCGTTTT
LOC_Os04g35560
Os.28042.1.S1_a_at--23--3031Chr04:21474899..21474923 (25 bp)
AATGCGTTTGTTTCCTTATATGTCT
LOC_Os04g35560
Os.28042.1.S1_a_at--990--10411Chr04:21474884..21474908 (25 bp)
TTATATGTCTCTCTGCTTGCATGCT
LOC_Os04g35560
Os.28042.1.S1_a_at--1096--8691Chr04:21474857..21474881 (25 bp)
TGTCCACAGCTCAGAACTTGTACAT
LOC_Os04g35560
Target Sequence 
TGCGGATTCGGTGTTCATTCCTATCCTCGCACGCATCACTCTTTTGGACCTTGATGAGGAATACATCAACTGCAGACCTA
GGTTACTCGAGTACTACACATTGGTGAAGCAGAGGCCCAGCTACAAGGTTGCAATTGGCAAGTTCTTCGGTGGGTGGAAG
AAGTACCGAACTCTCTTCAAGACCTCGTTCTTCCTTTGTGTCCGAACCTTGTTCAGGAAATACTAGGTGGTTCAGCAGAC
AGCAATGTGTACAGTGAATTCAACCTGAATATACGACCACTACATCTTGATGTGTTTTCTGCCGAGGGGTTGTGGTTGAT
GGCTCCTGATAGTTTTCGTTTTAGTTTGTGAAATCAAATGCGTTTGTTTCCTTATATGTCTCTCTGCTTGCATGCTCCTG
TCCACAGCTCAGAACTTGTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28042.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis