Browse Element(s) Details


OsAffx.14158.1.S1_at

Description tigr:9632.m03420
TID=OsAffx.14158.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3553011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35510Os.36698.1.S1_at11/114+21422013..21424151CENP-E-like kinetochore protein, putative, expressed
LOC_Os04g35510OsAffx.14157.1.S1_at11/114+21422013..21424151CENP-E-like kinetochore protein, putative, expressed
LOC_Os04g35520Os.26502.1.S1_a_at11/114+21435571..21439929L-ascorbate peroxidase 7, chloroplast precursor, putative, expressed
LOC_Os04g35530OsAffx.14158.1.S1_at11/114+21442184..21446637hypothetical protein
LOC_Os04g35540Os.52648.1.S1_at11/114+21450403..21455206Amino acid permease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14158.1.S1_at--721--8771Chr04:21444752..21444775 (24 bp)
TGATTACCAGGTCTTCAGTAGCAGA
LOC_Os04g35530
OsAffx.14158.1.S1_at--583--6331Chr04:21444794..21444818 (25 bp)
GATGCATGCAGTGCTATCTTCCACC
LOC_Os04g35530
OsAffx.14158.1.S1_at--922--8371Chr04:21444752..21444773 (22 bp)
GGCGATTACCAGGTCTTCAGTAGCA
LOC_Os04g35530
OsAffx.14158.1.S1_at--464--411Chr04:21445022..21445046 (25 bp)
ATCAGGTACAGCGTGCATCGGTGCA
LOC_Os04g35530
OsAffx.14158.1.S1_at--542--7331Chr04:21445042..21445066 (25 bp)
GTGCATGCAGTGCTATCTTCCACCG
LOC_Os04g35530
OsAffx.14158.1.S1_at--624--7051Chr04:21445140..21445164 (25 bp)
GTAAGACTTATCTACTTCTTTCCTT
LOC_Os04g35530
OsAffx.14158.1.S1_at--54--2111Chr04:21445231..21445255 (25 bp)
ACATGCTACCAGTGGCTGCCTAAAT
LOC_Os04g35530
OsAffx.14158.1.S1_at--376--6431Chr04:21445301..21445325 (25 bp)
GATCATTGTGACACCTTTTAGGCAT
LOC_Os04g35530
OsAffx.14158.1.S1_at--259--131Chr04:21445341..21445365 (25 bp)
ATTCACATGCTTCACACACGAGTAG
LOC_Os04g35530
OsAffx.14158.1.S1_at--805--6231Chr04:21445366..21445390 (25 bp)
GATGGCTGTACACAACATTCTGGCA
LOC_Os04g35530
OsAffx.14158.1.S1_at--214--3031Chr04:21445390..21445414 (25 bp)
AATCTGGCCTGTTTGTGGGTGGTTA
LOC_Os04g35530
Target Sequence 
TGATTACCAGGTCTTCAGTAGCAGATCAGGTACAGTGTGCATAGATGCATGCAGTGCTATCTTCCACCGTTCCATGAGAG
AGTCATCCAGGAATACTCCTTTTCCATAAGAAGGCAGGGAGAAATTCAAAAGGCGATTACCAGGTCTTCAGTAGCAGATC
AGGTACAGCGTGCATCGGTGCATGCAGTGCTATCTTCCACCGTTCCATGACTCCATGAGAGAGTCATCCAGGAATACTCC
TTTTCCATAAAAAGGCAGGGAGAAATTCAAAAGGAGTAAGACTTATCTACTTCTTTCCTTAAAGAACGTTTACTTATCTA
CTTCCTTCCTTAAAGAACGTTTACTTTCATTTTCACTTGGGAAAACACATGCTACCAGTGGCTGCCTAAATTCAAAATCA
TCCATGGAACAAAAAAAGAATGCGAAAATAGGTTTTGATCATTGTGACACCTTTTAGGCATGAAAAACAAAAGCAGATTC
ACATGCTTCACACACGAGTAGGATGGCTGTACACAACATTCTGGCAATCTGGCCTGTTTGTGGGTGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis