Browse Element(s) Details


Os.26626.1.S1_at

Description gb:AK070554.1
DB_XREF= gi:32980578
TID=Os.26626.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061A08, full insert sequence.
FL= gb:AK070554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g334007/11Basic 7S globulin precursor, putative, expressed
LOC_Os05g334101/11Basic 7S globulin precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33380Os.2697.1.S1_a_at11/115+19523585..19525771Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g33380Os.8999.3.S1_x_at2/115+19523585..19525771Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g33390OsAffx.27138.1.S1_at11/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.17830.1.S1_at10/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.49370.1.S1_x_at5/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.5828.2.S1_at3/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.8984.1.S1_x_at1/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33400Os.26626.1.S1_at7/115+19548822..19550296Basic 7S globulin precursor, putative, expressed
LOC_Os05g33410Os.26626.1.S1_at1/115+19551358..19552671Basic 7S globulin precursor, putative, expressed
LOC_Os05g33420NANA5+19555731..19557051Xyloglucanase inhibitor, putative
LOC_Os05g33430Os.50625.1.S1_at10/115+19562514..19564236Basic 7S globulin precursor, putative, expressed
LOC_Os05g33440Os.51907.1.S1_at11/115+19566582..19567950mTERF family protein, expressed
LOC_Os05g33450NANA5+19570712..19571221xanthine/uracil/vitamin C permease family protein, putative
LOC_Os05g33460Os.23176.1.S1_at11/115+19575229..19576768mTERF family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26626.1.S1_at--683--5991Chr05:19549819..19549843 (25 bp)
GAGACGTCCATGATCCCGCGAGTGC
LOC_Os05g33400
Os.26626.1.S1_at--385--7411Chr05:19549930..19549954 (25 bp)
GTGTTCCAGAGCGAGGCCACGTCGT
LOC_Os05g33400
Os.26626.1.S1_at--357--8232Chr05:19550138..19550162 (25 bp)
GGCAAACGACCTGCAACAACTTTCG
LOC_Os05g33400
Os.26626.1.S1_at--855--10291Chr05:19550158..19550182 (25 bp)
TTTCGCCTCGGCTAGATGTGCAACG
LOC_Os05g33400
Os.26626.1.S1_at--85--791Chr05:19550173..19550197 (25 bp)
ATGTGCAACGCATGGCAGTCGCCAC
LOC_Os05g33400
Os.26626.1.S1_at--1066--9031Chr05:19550198..19550222 (25 bp)
TGCAGCTTAGCTTACTATCTCAAAA
LOC_Os05g33400
Os.26626.1.S1_at--630--4951Chr05:19550239..19550263 (25 bp)
GCATTTCTTTGTGCAATCGTGTGAA
LOC_Os05g33400
Os.26626.1.S1_at--191--2011Chr05:19550294..19550318 (25 bp)
ACTAGTCAACCAGCGTAGGCATTTG
NONE
Os.26626.1.S1_at--29--8291Chr05:19550311..19550335 (25 bp)
GGCATTTGACTTGGATCTACTTGTT
NONE
Os.26626.1.S1_at--966--9871NONE
TACTTGTTCTTTATCATATCCTTGA
NONE
Os.26626.1.S1_at--615--1331Chr05:19550358..19550382 (25 bp)
AGAGGTGGCGTTTGACTGAAACAAC
NONE
Target Sequence 
GAGACGTCCATGATCCCGCGAGTGCCGGCCGTGGCTCCGTTCAAGCTGTGCTACGACGGGAGCAAGGTGGCGGGCACNCG
CGTGGGGCCGGCNCNTGCCNACGGTCGAGCTNGTGTTCCAGAGCGAGGCCACGTCGTGGGTGGTGTTCGGGGCGAACTCG
ATGGTGGCCACCAAGGGCGGCGCTCTCTGCCTCGGTGTGGTGGACGGCGGCGTGGCGTCGGAAACGTCGGTGGTGATCGG
CGGTCACATGATGGAGGACAACCTGCTGGAGTTTGACCTGGTGGGATCGCGGCTGGGGTTCAGCTCCTCCCTCCNGTTCC
GGCAAACGACCTGCAACAACTTTCGCCTCGGCTAGATGTGCAACGCATGGCAGTCGCCACTGCAGCTTAGCTTACTATCT
CAAAAAAAAAAAAGATGCTTTGCATTTCTTTGTGCAATCGTGTGAAGTTGTTGGAATAAATTGTTCATCCATTACAACTA
GTCAACCAGCGTAGGCATTTGACTTGGATCTACTTGTTCTTTATCATATCCTTGATAGTGAGAGGTGGCGTTTGACTGAA
ACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis