Browse Element(s) Details


Os.26703.1.S1_at

Description gb:AK073990.1
DB_XREF= gi:32984013
TID=Os.26703.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26703 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072D10, full insert sequence.
FL= gb:AK120129.1 gb:AK073990.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4650011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46450OsAffx.21446.2.A1_at11/111+26755031..26756117hypothetical protein
LOC_Os01g46460NANA1+26756901..26757432hypothetical protein
LOC_Os01g46470OsAffx.21445.3.S1_x_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46470OsAffx.21445.1.S1_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46470OsAffx.21445.2.S1_x_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46490NANA1+26773673..26773873hypothetical protein
LOC_Os01g46500Os.26703.1.S1_at11/111+26776027..26779710F-box domain containing protein, expressed
LOC_Os01g46510Os.27843.1.S2_at11/111+26780631..26792799WD-40 repeat family protein, putative, expressed
LOC_Os01g46510Os.27843.1.S1_at11/111+26780631..26792799WD-40 repeat family protein, putative, expressed
LOC_Os01g46510Os.27843.2.S1_at11/111+26780631..26792799WD-40 repeat family protein, putative, expressed
LOC_Os01g46510OsAffx.21446.2.A1_at6/111+26780631..26792799WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26703.1.S1_at--166--7471Chr01:26779117..26779141 (25 bp)
GTGTGCAGCAGGATCGATACCGTCA
LOC_Os01g46500
Os.26703.1.S1_at--867--511Chr01:26779129..26779153 (25 bp)
ATCGATACCGTCACCTGAAGGAGCT
LOC_Os01g46500
Os.26703.1.S1_at--132--3651Chr01:26779166..26779190 (25 bp)
CTTCGACGGACTGGGCTGGCAAGCT
LOC_Os01g46500
Os.26703.1.S1_at--393--5171Chr01:26779184..26779208 (25 bp)
GCAAGCTGGCTTTGTCAGGCTGATA
LOC_Os01g46500
Os.26703.1.S1_at--1139--351Chr01:26779206..26779230 (25 bp)
ATAATGAAGAGGTCGCCGTTGCTGA
LOC_Os01g46500
Os.26703.1.S1_at--1010--8891Chr01:26779228..26779252 (25 bp)
TGAGACGCGTTCACCTGCTTGACGG
LOC_Os01g46500
Os.26703.1.S1_at--500--6831Chr01:26779361..26779385 (25 bp)
GTTTCGCTGGCCTCCTCAAATAATT
LOC_Os01g46500
Os.26703.1.S1_at--280--1631Chr01:26779394..26779418 (25 bp)
AGCGTGTCCTTTCAGTTAACTTGTT
LOC_Os01g46500
Os.26703.1.S1_at--717--7271Chr01:26779446..26779470 (25 bp)
GTGCCTTGTGACTTTGCTTGACGAT
LOC_Os01g46500
Os.26703.1.S1_at--146--1611Chr01:26779484..26779508 (25 bp)
AGCTGAAGTGCTCCGGTTCCATGTC
LOC_Os01g46500
Os.26703.1.S1_at--1075--231Chr01:26779504..26779528 (25 bp)
ATGTCTGTCCCTTTACAAAACCGTG
LOC_Os01g46500
Target Sequence 
GTGTGCAGCAGGATCGATACCGTCACCTGAAGGAGCTCGTCGTGGCCGGCTTCGACGGACTGGGCTGGCAAGCTGGCTTT
GTCAGGCTGATAATGAAGAGGTCGCCGTTGCTGAGACGCGTTCACCTGCTTGACGGGGAGGTCAGGGATGACGAGGGGGA
GCTGGGGGATCTGCAGATCGTCCCACGCCACCGGGAGTGGCACGAGTGTGAGCGAGCTGAGGTGCTCGATGACCTCACCA
CTGGGTTTCGCTGGCCTCCTCAAATAATTCTGGAATAAGCGTGTCCTTTCAGTTAACTTGTTTAGATTAGGAAAATAATA
ATAATATGTGTGCCTTGTGACTTTGCTTGACGATGCAAATGACGCAGAGCTGAAGTGCTCCGGTTCCATGTCTGTCCCTT
TACAAAACCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26703.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis