Browse Element(s) Details


Os.27843.1.S2_at

Description gb:AK111686.1
DB_XREF= gi:37988349
TID=Os.27843.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27843 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0006H05.19 (OSJNBb0006H05.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170K17, full insert sequence.
FL= gb:AK111686.1 gb:AK111531.1 gb:AK111843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4651011/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46450OsAffx.21446.2.A1_at11/111+26755031..26756117hypothetical protein
LOC_Os01g46460NANA1+26756901..26757432hypothetical protein
LOC_Os01g46470OsAffx.21445.3.S1_x_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46470OsAffx.21445.1.S1_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46470OsAffx.21445.2.S1_x_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46490NANA1+26773673..26773873hypothetical protein
LOC_Os01g46500Os.26703.1.S1_at11/111+26776027..26779710F-box domain containing protein, expressed
LOC_Os01g46510Os.27843.1.S2_at11/111+26780631..26792799WD-40 repeat family protein, putative, expressed
LOC_Os01g46510Os.27843.1.S1_at11/111+26780631..26792799WD-40 repeat family protein, putative, expressed
LOC_Os01g46510Os.27843.2.S1_at11/111+26780631..26792799WD-40 repeat family protein, putative, expressed
LOC_Os01g46510OsAffx.21446.2.A1_at6/111+26780631..26792799WD-40 repeat family protein, putative, expressed
LOC_Os01g46519NANA1+26811976..26812161NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27843.1.S2_at--319--2611Chr01:26781155..26781179 (25 bp)
AACGCCTGACAATGCCGAACGGATG
LOC_Os01g46510
Os.27843.1.S2_at--714--4531Chr01:26781127..26781151 (25 bp)
GCCCCTGGCAACGTGGAAGCTACTA
LOC_Os01g46510
Os.27843.1.S2_at--593--1511Chr01:26781095..26781119 (25 bp)
AGCAGCAGCCCCTGGTAATGTGGAA
LOC_Os01g46510
Os.27843.1.S2_at--34--4731Chr01:26780974..26780998 (25 bp)
GCTGTTACTCCTGGTCAAGTTACAA
LOC_Os01g46510
Os.27843.1.S2_at--875--4031Chr01:26780838..26780862 (25 bp)
CGATTCGATTCTTTTAGCAGTGTGC
LOC_Os01g46510
Os.27843.1.S2_at--444--1531Chr01:26780823..26780847 (25 bp)
AGCAGTGTGCCAGTTTTTTCGTATG
LOC_Os01g46510
Os.27843.1.S2_at--186--7391Chr01:26780726..26780750 (25 bp)
GTGAGTAGCCCTGTACATCGACTGT
LOC_Os01g46510
Os.27843.1.S2_at--376--9371Chr01:26780709..26780733 (25 bp)
TCGACTGTCCGCGTTCCAAAGAGAA
LOC_Os01g46510
Os.27843.1.S2_at--666--5471Chr01:26780687..26780711 (25 bp)
GAACTACCATATGCATTGTGTGACA
LOC_Os01g46510
Os.27843.1.S2_at--5--7471Chr01:26780670..26780694 (25 bp)
GTGTGACATACTTAGCGTTTTGCTG
LOC_Os01g46510
Os.27843.1.S2_at--572--1631Chr01:26780657..26780681 (25 bp)
AGCGTTTTGCTGTCCGTGATTAATC
LOC_Os01g46510
Target Sequence 
AACGCCTGACAATGCCGAACGGATGGCAGCCCCTGGCAACGTGGAAGCTACTACAGAACCAGCAGCAGCCCCTGGTAATG
TGGAAGGTACAGCAGCGGCGGCAACGGACGCAACAAGTAATGCTGATGCTACTTNTGGTGCTCCAGCTCCGGCAGCTGAT
TNTAATGGCGCCGATCCACCTGCTGTTACTCCTGGTCAAGTTACAAATGGTGCACCTTNTACCGAGACACCGGAGACAGC
AGATAAGCCATNTTCAACTGAGCCATCACCAGCACCACCTATACCAAATGTGCCTGCTGTATAAAATTTGTCGGATTCGA
TTCGATTCTTTTAGCAGTGTGCCAGTTTTTTCGTATGCTGATGTATTCATTCCNCTGTAATTTTTCCATACTGGTATAGT
TTTCTGTATTCAGAGACCGTGGGCAGTATGTGAGTAGCCCTGTACATCGACTGTCCGCGTTCCAAAGAGAACTACCATAT
GCATTGTGTGACATACTTAGCGTTTTGCTGTCCGTGATTAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27843.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis