Browse Element(s) Details


OsAffx.21445.3.S1_x_at

Description gb:NM_192408.1
DB_XREF= gi:34911899
GEN=OSJNBb0032K15.27
TID=OsAffx.21445.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0032K15.27 (OSJNBb0032K15.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4647011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46410OsAffx.23687.1.S1_at11/111+26741749..26743030expressed protein
LOC_Os01g46420NANA1+26745147..26746163hypothetical protein
LOC_Os01g46430Os.28901.1.S1_at11/111+26747111..26748829glycosyl transferase family 1 protein, putative, expressed
LOC_Os01g46440NANA1+26750358..26750588expressed protein
LOC_Os01g46450OsAffx.21446.2.A1_at11/111+26755031..26756117hypothetical protein
LOC_Os01g46460NANA1+26756901..26757432hypothetical protein
LOC_Os01g46470OsAffx.21445.3.S1_x_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46470OsAffx.21445.1.S1_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46470OsAffx.21445.2.S1_x_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46490NANA1+26773673..26773873hypothetical protein
LOC_Os01g46500Os.26703.1.S1_at11/111+26776027..26779710F-box domain containing protein, expressed
LOC_Os01g46510Os.27843.1.S2_at11/111+26780631..26792799WD-40 repeat family protein, putative, expressed
LOC_Os01g46510Os.27843.1.S1_at11/111+26780631..26792799WD-40 repeat family protein, putative, expressed
LOC_Os01g46510Os.27843.2.S1_at11/111+26780631..26792799WD-40 repeat family protein, putative, expressed
LOC_Os01g46510OsAffx.21446.2.A1_at6/111+26780631..26792799WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21445.3.S1_x_at--974--6471Chr01:26759417..26759441 (25 bp)
GATAGAGTCATCTGATAAGGCCATA
LOC_Os01g46470
OsAffx.21445.3.S1_x_at--550--9771Chr01:26759402..26759426 (25 bp)
TAAGGCCATAGAGAGACAGATAGTT
LOC_Os01g46470
OsAffx.21445.3.S1_x_at--998--6551Chr01:26759377..26759401 (25 bp)
GATTCAATATATTCCTTCGCACAAG
LOC_Os01g46470
OsAffx.21445.3.S1_x_at--1141--10631Chr01:26759130..26759386 (25 bp)
TTCGCACAAGACAACCAAGCGTGGT
LOC_Os01g46470
OsAffx.21445.3.S1_x_at--274--3091Chr01:26759102..26759126 (25 bp)
AATACAAAGCGCTATCTGATCCCAG
LOC_Os01g46470
OsAffx.21445.3.S1_x_at--631--471Chr01:26759089..26759113 (25 bp)
ATCTGATCCCAGTAGCGAAAGTGAC
LOC_Os01g46470
OsAffx.21445.3.S1_x_at--1143--9891Chr01:26759077..26759101 (25 bp)
TAGCGAAAGTGACAACTCTGAAGTT
LOC_Os01g46470
OsAffx.21445.3.S1_x_at--377--6651Chr01:26759055..26759079 (25 bp)
GTTGATCCAAGTTATAACCCTGAAT
LOC_Os01g46470
OsAffx.21445.3.S1_x_at--329--7651Chr01:26759024..26759048 (25 bp)
GGGATGACCTGGAACCTGGTAATTC
LOC_Os01g46470
OsAffx.21445.3.S1_x_at--365--1431Chr01:26759012..26759036 (25 bp)
AACCTGGTAATTCTGGTACTATCCA
LOC_Os01g46470
OsAffx.21445.3.S1_x_at--363--9891Chr01:26758996..26759020 (25 bp)
TACTATCCAAGGTAGCAATGACGGT
LOC_Os01g46470
Target Sequence 
GATAGAGTCATCTGATAAGGCCATAGAGAGACAGATAGTTGATTCAATATATTCCTTCGCACAAGACAACCAAGCGTGGT
TGGAATACAAAGCGCTATCTGATCCCAGTAGCGAAAGTGACAACTCTGAAGTTGATCCAAGTTATAACCCTGAATCTGAT
GGGGATGACCTGGAACCTGGTAATTCTGGTACTATCCAAGGTAGCAATGACGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21445.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis