Browse Element(s) Details


Os.28901.1.S1_at

Description gb:AK110920.1
DB_XREF= gi:32996129
TID=Os.28901.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0032K15.23 (OSJNBb0032K15.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D01, full insert sequence.
FL= gb:AK110920.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4643011/11glycosyl transferase family 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46380Os.4767.2.S1_x_at11/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46380Os.21537.1.S1_x_at3/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46390OsAffx.21449.1.S1_at11/111+26725112..26725522hypothetical protein
LOC_Os01g46400Os.32478.1.S1_at11/111+26728417..26730344expressed protein
LOC_Os01g46410OsAffx.23687.1.S1_at11/111+26741749..26743030expressed protein
LOC_Os01g46420NANA1+26745147..26746163hypothetical protein
LOC_Os01g46430Os.28901.1.S1_at11/111+26747111..26748829glycosyl transferase family 1 protein, putative, expressed
LOC_Os01g46440NANA1+26750358..26750588expressed protein
LOC_Os01g46450OsAffx.21446.2.A1_at11/111+26755031..26756117hypothetical protein
LOC_Os01g46460NANA1+26756901..26757432hypothetical protein
LOC_Os01g46470OsAffx.21445.3.S1_x_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46470OsAffx.21445.1.S1_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46470OsAffx.21445.2.S1_x_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46490NANA1+26773673..26773873hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28901.1.S1_at--135--5411Chr01:26748316..26748340 (25 bp)
GAAGCTCAAGGCGTTCTACAACGCG
LOC_Os01g46430
Os.28901.1.S1_at--585--2211Chr01:26748333..26748357 (25 bp)
ACAACGCGCTGGACGTGTTCGTGGA
LOC_Os01g46430
Os.28901.1.S1_at--1053--5771Chr01:26748470..26748494 (25 bp)
GACGAGTTCGGGTACATGTTCGCGC
LOC_Os01g46430
Os.28901.1.S1_at--901--1911Chr01:26748498..26748522 (25 bp)
ACGTGGAGTCGCTGCTCGAGAAGCT
LOC_Os01g46430
Os.28901.1.S1_at--319--5711Chr01:26748581..26748605 (25 bp)
GACTACGCCAAGACCATGTTCGCCG
LOC_Os01g46430
Os.28901.1.S1_at--491--6211Chr01:26748631..26748655 (25 bp)
GAGGCTCTTCCTCTGTGTCAAGAAC
LOC_Os01g46430
Os.28901.1.S1_at--626--3231Chr01:26748649..26748673 (25 bp)
CAAGAACGACACTTTCTGTGCCTAC
LOC_Os01g46430
Os.28901.1.S1_at--900--9951Chr01:26748671..26748695 (25 bp)
TACCCAGCTGAGTTCGATTAGTTCG
LOC_Os01g46430
Os.28901.1.S1_at--765--1191Chr01:26748690..26748714 (25 bp)
AGTTCGTTAATTTTGATCAGCGTAC
LOC_Os01g46430
Os.28901.1.S1_at--551--391Chr01:26748705..26748729 (25 bp)
ATCAGCGTACGTGTGTTTATTTCAT
LOC_Os01g46430
Os.28901.1.S1_at--110--10191Chr01:26748782..26748806 (25 bp)
TATACTCTGTATTTGGACCTCATAT
LOC_Os01g46430
Target Sequence 
GAAGCTCAAGGCGTTCTACAACGCGCTGGACGTGTTCGTGGACCCGACGCTGCGGCCGCAGGGCCTGGACCTGACGCTCA
TGGAGGCCATGCAGTGCGGCAAGCCGGTGCTCGCCACGAGGTTCCCCAGCATCAAGGGCAGCATCGTCGTCGACGACGAG
TTCGGGTACATGTTCGCGCCCAACGTGGAGTCGCTGCTCGAGAAGCTGGAGGCCGTGGTGGAAGAGGGCGCCCGCCGCGC
CGCGCAGCGCGGCCGCGCGTGCCGCGACTACGCCAAGACCATGTTCGCCGCCACCAAGATGGCGCTCGCGTACGAGAGGC
TCTTCCTCTGTGTCAAGAACGACACTTTCTGTGCCTACCCAGCTGAGTTCGATTAGTTCGTTAATTTTGATCAGCGTACG
TGTGTTTATTTCATTGAATACTCTATTTAATAATCACAGAAATTAAACTATATTAATCTTCGTATTTATACTCTGTATTT
GGACCTCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis