Browse Element(s) Details


Os.32478.1.S1_at

Description gb:AK061145.1
DB_XREF= gi:32971163
TID=Os.32478.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0032K15.17 (OSJNBb0032K15.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D04, full insert sequence.
FL= gb:AK061145.1 gb:AK058693.1 gb:AK104312.1 gb:AK103547.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4640011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46360OsAffx.23686.2.S1_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46360OsAffx.23686.1.S1_s_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46370Os.41516.1.S1_at11/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.51595.1.S1_at10/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370OsAffx.23684.1.S1_x_at2/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.7172.1.S1_at1/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46380Os.4767.2.S1_x_at11/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46380Os.21537.1.S1_x_at3/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46390OsAffx.21449.1.S1_at11/111+26725112..26725522hypothetical protein
LOC_Os01g46400Os.32478.1.S1_at11/111+26728417..26730344expressed protein
LOC_Os01g46410OsAffx.23687.1.S1_at11/111+26741749..26743030expressed protein
LOC_Os01g46420NANA1+26745147..26746163hypothetical protein
LOC_Os01g46430Os.28901.1.S1_at11/111+26747111..26748829glycosyl transferase family 1 protein, putative, expressed
LOC_Os01g46440NANA1+26750358..26750588expressed protein
LOC_Os01g46450OsAffx.21446.2.A1_at11/111+26755031..26756117hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32478.1.S1_at--386--3411Chr01:26728765..26728789 (25 bp)
CAGAAGGTGCAGCTCTACAACGACT
LOC_Os01g46400
Os.32478.1.S1_at--832--8171Chr01:26728704..26728728 (25 bp)
GGAACGACATGCTCTTCCAGATGCT
LOC_Os01g46400
Os.32478.1.S1_at--328--631Chr01:26728684..26728708 (25 bp)
ATGCTCCTCGTCTAACGCGATCGAT
LOC_Os01g46400
Os.32478.1.S1_at--189--9331Chr01:26728660..26728684 (25 bp)
TCGCCAATTCGCCATCGGTAAATGC
LOC_Os01g46400
Os.32478.1.S1_at--391--611Chr01:26728639..26728663 (25 bp)
ATGCGACTTCTACTGCACAGACAGG
LOC_Os01g46400
Os.32478.1.S1_at--374--7931Chr01:26728616..26728640 (25 bp)
GGATTGCTCTTGCTGTTGTTTCAAA
LOC_Os01g46400
Os.32478.1.S1_at--88--7931Chr01:26728578..26728602 (25 bp)
GGATTTATTCGAACTTCCCCAATAG
LOC_Os01g46400
Os.32478.1.S1_at--510--9551Chr01:26728537..26728561 (25 bp)
TCTTTTCCCTTCATTTCCTTTCATT
LOC_Os01g46400
Os.32478.1.S1_at--536--5211Chr01:26728494..26728518 (25 bp)
GAATTTTTAATGGATCGTCACCGGA
LOC_Os01g46400
Os.32478.1.S1_at--1098--1071Chr01:26728466..26728490 (25 bp)
AGTGAACGAAAGTGTGCCTCCGAAA
LOC_Os01g46400
Os.32478.1.S1_at--255--7411Chr01:26728434..26728458 (25 bp)
GTGATACTGTCACTCCATTCATTTC
LOC_Os01g46400
Target Sequence 
CAGAAGGTGCAGCTCTACAACGACTGCATCCACTGGTGCCTGCCAGGCCCCATCGACATCTGGAACGACATGCTCTTCCA
GATGCTCCTCGTCTAACGCGATCGATCGCCAATTCGCCATCGGTAAATGCGACTTCTACTGCACAGACAGGATTGCTCTT
GCTGTTGTTTCAAAGCAGTTTTGACAAGGATTTATTCGAACTTCCCCAATAGATTCTTTTTTTCTCTCTCTTTTCCCTTC
ATTTCCTTTCATTTNTCGTTTATGCTGACGCGAATTTTTAATGGATCGTCACCGGAAAGAGTGAACGAAAGTGTGCCTCC
GAAAGANCACTGTGATACTGTCACTCCATTCATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis