Browse Element(s) Details


Os.41516.1.S1_at

Description gb:NM_192393.1
DB_XREF= gi:34911869
GEN=OSJNBb0032K15.12
TID=Os.41516.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41516 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) lipase-like protein (OSJNBb0032K15.12), mRNA.
PROD=lipase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4637011/11lipase class 3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46340Os.41519.1.S1_at11/111+26691357..26696371expressed protein
LOC_Os01g46340Os.50843.1.S1_at11/111+26691357..26696371expressed protein
LOC_Os01g46350Os.9524.1.S1_at11/111+26695246..26700949expressed protein
LOC_Os01g46350Os.9524.1.S2_at11/111+26695246..26700949expressed protein
LOC_Os01g46360OsAffx.23686.2.S1_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46360OsAffx.23686.1.S1_s_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46370Os.41516.1.S1_at11/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.51595.1.S1_at10/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370OsAffx.23684.1.S1_x_at2/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.7172.1.S1_at1/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46380Os.4767.2.S1_x_at11/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46380Os.21537.1.S1_x_at3/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46390OsAffx.21449.1.S1_at11/111+26725112..26725522hypothetical protein
LOC_Os01g46400Os.32478.1.S1_at11/111+26728417..26730344expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41516.1.S1_at--247--1791Chr01:26711122..26711146 (25 bp)
ACCGTCGTCGGCCATAGCCTCGGAG
LOC_Os01g46370
Os.41516.1.S1_at--91--7171Chr01:26711065..26711089 (25 bp)
GTCTCCAACGGCCTGAATCAGCACG
LOC_Os01g46370
Os.41516.1.S1_at--806--1931Chr01:26711058..26711082 (25 bp)
ACGGCCTGAATCAGCACGGCGCCTG
LOC_Os01g46370
Os.41516.1.S1_at--441--7631Chr01:26710995..26711019 (25 bp)
GGGACTCCGGGTTCAGAAAGCTCTT
LOC_Os01g46370
Os.41516.1.S1_at--743--1811Chr01:26710992..26711016 (25 bp)
ACTCCGGGTTCAGAAAGCTCTTCGA
LOC_Os01g46370
Os.41516.1.S1_at--635--3971Chr01:26710988..26711012 (25 bp)
CGGGTTCAGAAAGCTCTTCGACGAG
LOC_Os01g46370
Os.41516.1.S1_at--537--9651Chr01:26710983..26711007 (25 bp)
TCAGAAAGCTCTTCGACGAGCTCCC
LOC_Os01g46370
Os.41516.1.S1_at--600--4651Chr01:26710941..26710965 (25 bp)
GCGTCTGCAACTCGCCGGACGTCGT
LOC_Os01g46370
Os.41516.1.S1_at--689--9411Chr01:26710920..26710944 (25 bp)
TCGTGCCCAAGTACCCGCCGATGGG
LOC_Os01g46370
Os.41516.1.S1_at--1040--5891Chr01:26710876..26710900 (25 bp)
GAGCTCCCCGTCGACACGAGGAGGT
LOC_Os01g46370
Os.41516.1.S1_at--883--6171Chr01:26710859..26710883 (25 bp)
GAGGAGGTCGCCGTACCTCAAGTCG
LOC_Os01g46370
Target Sequence 
ACCGTCGTCGGCCATAGCCTCGGAGCCGCCGTCGCGACCCTCAACGCCGCCGACATCGTCTCCAACGGCCTGAATCAGCA
CGGCGCCTGCCCCGTCACGGCGGTCGCCTTCGCCTGCCCGCGCGTCGGGGACTCCGGGTTCAGAAAGCTCTTCGACGAGC
TCCCCGGCCTTCGCCTCCTCCGCGTCTGCAACTCGCCGGACGTCGTGCCCAAGTACCCGCCGATGGGGTACGCGGACGTC
GGCGTCGAGCTCCCCGTCGACACGAGGAGGTCGCCGTACCTCAAGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis