Browse Element(s) Details


OsAffx.23684.1.S1_x_at

Description gb:NM_192374.1
DB_XREF= gi:34911831
GEN=OJ1159_D09.24
TID=OsAffx.23684.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) lipase-like protein (OJ1159_D09.24), mRNA.
PROD=lipase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4625011/11Lipase family protein
LOC_Os01g463702/11lipase class 3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46200Os.33614.1.S1_at11/111+26604924..26611785expressed protein
LOC_Os01g46200Os.53065.1.S1_at11/111+26604924..26611785expressed protein
LOC_Os01g46210OsAffx.2251.1.S1_at11/111+26613289..26614758GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46220OsAffx.9221.1.S1_at11/111+26617082..26619075GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46230NANA1+26620053..26621849pentatricopeptide, putative
LOC_Os01g46240OsAffx.11486.1.S1_s_at11/111+26623542..26625455lipase class 3 family protein, putative, expressed
LOC_Os01g46250OsAffx.23684.1.S1_x_at11/111+26627042..26629765Lipase family protein
LOC_Os01g46260Os.57336.1.S1_at10/111+26633086..26634085expressed protein
LOC_Os01g46270OsAffx.9219.1.S1_at11/111+26638916..26639962wax synthase isoform 2, putative, expressed
LOC_Os01g46280OsAffx.9218.1.S1_s_at11/111+26642801..26644207hypothetical protein
LOC_Os01g46280OsAffx.9218.2.S1_at11/111+26642801..26644207hypothetical protein
LOC_Os01g46290Os.32827.1.S1_at11/111+26648264..26651617Lipase family protein, expressed
LOC_Os01g46300NANA1+26653326..26653755hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23684.1.S1_x_at--68--972Chr01:26629170..26629194 (25 bp)
AGGACGAGGAGACCAGCATCACCGT
LOC_Os01g46250
OsAffx.23684.1.S1_x_at--122--8551Chr01:26629455..26629479 (25 bp)
TGGAGCTGCTGATCGACACGCGGCT
LOC_Os01g46250
OsAffx.23684.1.S1_x_at--855--10671Chr01:26629487..26629511 (25 bp)
TTCCTCAGGCGCCACGGCAGCGAGT
LOC_Os01g46250
OsAffx.23684.1.S1_x_at--1145--6091Chr01:26629508..26629532 (25 bp)
GAGTCGCAGTCGCACGACCTCGAGT
LOC_Os01g46250
OsAffx.23684.1.S1_x_at--315--1912Chr01:26629599..26629623 (25 bp)
ACGTGGCGCTGGTGAACAAGTTCGA
LOC_Os01g46250
OsAffx.23684.1.S1_x_at--157--5511Chr01:26629612..26629636 (25 bp)
GAACAAGTTCGACGACTGCCTGGCG
LOC_Os01g46250
OsAffx.23684.1.S1_x_at--665--9371Chr01:26629620..26629644 (25 bp)
TCGACGACTGCCTGGCGGACGAGTA
LOC_Os01g46250
OsAffx.23684.1.S1_x_at--42--9971Chr01:26629643..26629667 (25 bp)
TACCCCGTGCCCGTGCGATGGAAGG
LOC_Os01g46250
OsAffx.23684.1.S1_x_at--401--9131Chr01:26629656..26629680 (25 bp)
TGCGATGGAAGGTGCACCACAACAA
LOC_Os01g46250
OsAffx.23684.1.S1_x_at--1095--3211Chr01:26629678..26629702 (25 bp)
CAAGAGCATGGTGAAGGGTCCCGAC
LOC_Os01g46250
OsAffx.23684.1.S1_x_at--898--7751Chr01:26629711..26629735 (25 bp)
GGTGTTGCAAGACCACGAGCCTGAT
LOC_Os01g46250
Target Sequence 
AGGACGAGGAGACCAGCATCACCGTCATCGGCCACAGCCTGGGCGCCACCCTGGCCACCCTGAACGCCGCCGACATCGCC
GCCAACTCGTACAACACGTCCAGCCTCAGCCCGTCCGGCGAGACCCGCGCCCCGGTCACCGCCGTGGTGTTCGGCAGCCC
GCGCACGGGCGACCGCGGCTTCCGCGACGCCTTCCACCGGCTCCGGGACCTCCGGATGCTCCGCGTCCGCAACCGGCCGG
ACCGCATCCCGCACTACCCGCCGGTGGGCTACGCCGACGTCGGCGTGGAGCTGCTGATCGACACGCGGCTGTCGCCGTTC
CTCAGGCGCCACGGCAGCGAGTCGCAGTCGCACGACCTCGAGTGCCACCTGCACGGCGTCGCCGGGTGGCACGGCGACCA
CCGCGGGTTCGAGCTGGTGGTCGACCGGGACGTGGCGCTGGTGAACAAGTTCGACGACTGCCTGGCGGACGAGTACCCCG
TGCCCGTGCGATGGAAGGTGCACCACAACAAGAGCATGGTGAAGGGTCCCGACGGGAGGTGGGTGTTGCAAGACCACGAG
CCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23684.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis