Browse Element(s) Details


OsAffx.9218.1.S1_s_at

Description gb:NM_192378.1
DB_XREF= gi:34911839
GEN=OJ1159_D09.28
TID=OsAffx.9218.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1159_D09.28 (OJ1159_D09.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4628011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46220OsAffx.9221.1.S1_at11/111+26617082..26619075GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46230NANA1+26620053..26621849pentatricopeptide, putative
LOC_Os01g46240OsAffx.11486.1.S1_s_at11/111+26623542..26625455lipase class 3 family protein, putative, expressed
LOC_Os01g46250OsAffx.23684.1.S1_x_at11/111+26627042..26629765Lipase family protein
LOC_Os01g46260Os.57336.1.S1_at10/111+26633086..26634085expressed protein
LOC_Os01g46270OsAffx.9219.1.S1_at11/111+26638916..26639962wax synthase isoform 2, putative, expressed
LOC_Os01g46280OsAffx.9218.1.S1_s_at11/111+26642801..26644207hypothetical protein
LOC_Os01g46280OsAffx.9218.2.S1_at11/111+26642801..26644207hypothetical protein
LOC_Os01g46290Os.32827.1.S1_at11/111+26648264..26651617Lipase family protein, expressed
LOC_Os01g46300NANA1+26653326..26653755hypothetical protein
LOC_Os01g46310OsAffx.31869.5.S1_x_at2/111+26658893..26659276retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9218.1.S1_s_at--902--5991Chr01:26644126..26644150 (25 bp)
GAGGGACGGGCCAAAGGTGCTACGG
LOC_Os01g46280
OsAffx.9218.1.S1_s_at--598--9051Chr01:26644109..26644133 (25 bp)
TGCTACGGGCGGAGCGGATGTGAGC
LOC_Os01g46280
OsAffx.9218.1.S1_s_at--455--1511Chr01:26644048..26644072 (25 bp)
AGCACCGCGCGGGTGATAGGGCAGA
LOC_Os01g46280
OsAffx.9218.1.S1_s_at--1123--2872Chr07:23365793..23365812 (20 bp)
AAGGTGCGGACGTGCGGTCGAGGCA
NONE
OsAffx.9218.1.S1_s_at--760--6191Chr01:26643954..26643978 (25 bp)
GAGGAAGCAGTCGTTGCCGGCGGCT
LOC_Os01g46280
OsAffx.9218.1.S1_s_at--346--8191Chr01:26643915..26643939 (25 bp)
GGAAGCGGTGGTCGGAGCCAATGCC
LOC_Os01g46280
OsAffx.9218.1.S1_s_at--218--951Chr01:26643858..26643882 (25 bp)
AGGAAGCTGTGGTCGGCACCAACAG
LOC_Os01g46280
OsAffx.9218.1.S1_s_at--224--4671Chr01:26642934..26642958 (25 bp)
GCGTGGTGACGAAAATGCGAACAAA
LOC_Os01g46280
OsAffx.9218.1.S1_s_at--1070--7991Chr01:26642907..26642931 (25 bp)
GGAGGACACTCAAAGGCTCAAAGCT
LOC_Os01g46280
OsAffx.9218.1.S1_s_at--82--2291Chr01:26642896..26642920 (25 bp)
AAAGGCTCAAAGCTCCCCACCTGGA
LOC_Os01g46280
OsAffx.9218.1.S1_s_at--282--3911Chr01:26642867..26642891 (25 bp)
CTGGCTGAGGCTGTGCCCGATCCGA
LOC_Os01g46280
Target Sequence 
GAGGGACGGGCCAAAGGTGCTACGGGCGGAGCGGATGTGAGCGCGGGAGCAGACACGAGGGGAGAAGTCGCGGGCGACAG
CACCGCGCGGGTGATAGGGCAGAGAAGGTGCGGACGTGCGGTCGAGGCAGCACGACAGACGGTGGGGGCGAGGAAGCAAC
TGTCAGCGGGGCGAGGAAGCAGTCGTTGCCGGCGGCTGGGCAACGGGGCAAGGAAGCGGTGGTCGGAGCCAATGCCGGGG
CGACGTGGGTGGAGAAGCGGCGGGGGTGAGGAAGCTGTGGTCGGCACCAACAGCGGGGCGATGAAGTTGCGTGGTGACGA
AAATGCGAACAAAGGGGAGGACACTCAAAGGCTCAAAGCTCCCCACCTGGACCCGCTGGCTGAGGCTGTGCCCGATCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9218.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis