Browse Element(s) Details


Os.57336.1.S1_at

Description gb:AK111325.1
DB_XREF= gi:32996534
TID=Os.57336.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-D09, full insert sequence.
FL= gb:AK111325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4626010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46200Os.33614.1.S1_at11/111+26604924..26611785expressed protein
LOC_Os01g46200Os.53065.1.S1_at11/111+26604924..26611785expressed protein
LOC_Os01g46210OsAffx.2251.1.S1_at11/111+26613289..26614758GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46220OsAffx.9221.1.S1_at11/111+26617082..26619075GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46230NANA1+26620053..26621849pentatricopeptide, putative
LOC_Os01g46240OsAffx.11486.1.S1_s_at11/111+26623542..26625455lipase class 3 family protein, putative, expressed
LOC_Os01g46250OsAffx.23684.1.S1_x_at11/111+26627042..26629765Lipase family protein
LOC_Os01g46260Os.57336.1.S1_at10/111+26633086..26634085expressed protein
LOC_Os01g46270OsAffx.9219.1.S1_at11/111+26638916..26639962wax synthase isoform 2, putative, expressed
LOC_Os01g46280OsAffx.9218.1.S1_s_at11/111+26642801..26644207hypothetical protein
LOC_Os01g46280OsAffx.9218.2.S1_at11/111+26642801..26644207hypothetical protein
LOC_Os01g46290Os.32827.1.S1_at11/111+26648264..26651617Lipase family protein, expressed
LOC_Os01g46300NANA1+26653326..26653755hypothetical protein
LOC_Os01g46310OsAffx.31869.5.S1_x_at2/111+26658893..26659276retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57336.1.S1_at--590--3591Chr01:26633548..26633572 (25 bp)
CATTGACTTCATCGGTGAGCGAACC
LOC_Os01g46260
Os.57336.1.S1_at--485--3811Chr01:26633581..26633605 (25 bp)
CTCCGTCTGGTTTCAGCATGCATTC
LOC_Os01g46260
Os.57336.1.S1_at--822--9291Chr01:26633612..26633636 (25 bp)
TCCGACGTGTCGATCTGTCCGTGTT
LOC_Os01g46260
Os.57336.1.S1_at--220--10271Chr01:26633657..26633681 (25 bp)
TTTGCATTGTGCAGCGTACATCCCT
LOC_Os01g46260
Os.57336.1.S1_at--5--10351Chr01:26633685..26633709 (25 bp)
TTTTCCTGCCAACTACTACGTACTG
LOC_Os01g46260
Os.57336.1.S1_at--312--9931Chr01:26633705..26633729 (25 bp)
TACTGTGCGTCTGTGCATTGTGCAA
LOC_Os01g46260
Os.57336.1.S1_at--279--31Chr01:26633721..26633745 (25 bp)
ATTGTGCAACCTGCATGCATGCTCT
LOC_Os01g46260
Os.57336.1.S1_at--273--10231NONE
TTTGGAGGCGCCTCAAACACGTACT
NONE
Os.57336.1.S1_at--439--2471Chr01:26633777..26633801 (25 bp)
AACACGTACTCGGTGGCCTCTTGTT
LOC_Os01g46260
Os.57336.1.S1_at--285--4291Chr01:26633793..26633817 (25 bp)
CCTCTTGTTCAGTTGTCCGTCAATA
LOC_Os01g46260
Os.57336.1.S1_at--1048--131Chr01:26633877..26633901 (25 bp)
ATTAGAACGCCGACAATAGCTCATT
LOC_Os01g46260
Target Sequence 
CATTGACTTCATCGGTGAGCGAACCGAGCTGCCCTCCGTCTGGTTTCAGCATGCATTCCCCTGCTCCGACGTGTCGATCT
GTCCGTGTTCCCACCATCTCTGCGTTGCTTTTGCATTGTGCAGCGTACATCCCTCTGTTTTCCTGCCAACTACTACGTAC
TGTGCGTCTGTGCATTGTGCAACCTGCATGCATGCTCTGTTTGGAGGATTTTTTTTTGGAGGCGCCTCAAACACGTACTC
GGTGGCCTCTTGTTCAGTTGTCCGTCAATAACATCCAAACTTATTATTGTCCTGAAAGACGGGTAACATGCGAGGCGAGT
GGTGTGAGCATTAGAACGCCGACAATAGCTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis