Browse Element(s) Details


OsAffx.9219.1.S1_at

Description tigr:9629.m04428
TID=OsAffx.9219.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4627011/11wax synthase isoform 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46210OsAffx.2251.1.S1_at11/111+26613289..26614758GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46220OsAffx.9221.1.S1_at11/111+26617082..26619075GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46230NANA1+26620053..26621849pentatricopeptide, putative
LOC_Os01g46240OsAffx.11486.1.S1_s_at11/111+26623542..26625455lipase class 3 family protein, putative, expressed
LOC_Os01g46250OsAffx.23684.1.S1_x_at11/111+26627042..26629765Lipase family protein
LOC_Os01g46260Os.57336.1.S1_at10/111+26633086..26634085expressed protein
LOC_Os01g46270OsAffx.9219.1.S1_at11/111+26638916..26639962wax synthase isoform 2, putative, expressed
LOC_Os01g46280OsAffx.9218.1.S1_s_at11/111+26642801..26644207hypothetical protein
LOC_Os01g46280OsAffx.9218.2.S1_at11/111+26642801..26644207hypothetical protein
LOC_Os01g46290Os.32827.1.S1_at11/111+26648264..26651617Lipase family protein, expressed
LOC_Os01g46300NANA1+26653326..26653755hypothetical protein
LOC_Os01g46310OsAffx.31869.5.S1_x_at2/111+26658893..26659276retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9219.1.S1_at--1004--7431Chr01:26639372..26639396 (25 bp)
GTGTACGCCGTCCACTTCCTATACT
LOC_Os01g46270
OsAffx.9219.1.S1_at--925--2051Chr01:26639385..26639409 (25 bp)
ACTTCCTATACTGCGTCCAGGTCTT
LOC_Os01g46270
OsAffx.9219.1.S1_at--254--10191Chr01:26639391..26639415 (25 bp)
TATACTGCGTCCAGGTCTTCCTCAC
LOC_Os01g46270
OsAffx.9219.1.S1_at--1147--4471Chr01:26639501..26639525 (25 bp)
GCCGTCGCGTCGCTGAACGACTTCT
LOC_Os01g46270
OsAffx.9219.1.S1_at--792--7511Chr01:26639536..26639560 (25 bp)
GTGGAACCTGATGGCGGTGGACCTC
LOC_Os01g46270
OsAffx.9219.1.S1_at--390--9611Chr01:26639631..26639655 (25 bp)
TCATGTCGGGCCTGCTCCACGAGCT
LOC_Os01g46270
OsAffx.9219.1.S1_at--205--4671Chr01:26639721..26639745 (25 bp)
GCGTGTCCCAGATCGCCGAGCGCTG
LOC_Os01g46270
OsAffx.9219.1.S1_at--840--10531Chr01:26639807..26639831 (25 bp)
TTCATGGTCGTCACCATATCGGAGC
LOC_Os01g46270
OsAffx.9219.1.S1_at--246--131Chr01:26639822..26639846 (25 bp)
ATATCGGAGCTCTTCTTCGGGCCGT
LOC_Os01g46270
OsAffx.9219.1.S1_at--1011--10531Chr01:26639834..26639858 (25 bp)
TTCTTCGGGCCGTTCATGAGGGCCG
LOC_Os01g46270
OsAffx.9219.1.S1_at--873--10771Chr01:26639903..26639927 (25 bp)
TTGATCATGGGCGTCTCGAGGCGTC
LOC_Os01g46270
Target Sequence 
GTGTACGCCGTCCACTTCCTATACTGCGTCCAGGTCTTCCTCACGCTCGACCTCGTCCTCTCCTCCGTCGCGCTCGCCTC
GGCGACCGTCCTGGACGCCGGCCTGGAGAGGCAGTTCAGCACGCCGCTCGCCGTCGCGTCGCTGAACGACTTCTGGGGGC
GGCAGTGGAACCTGATGGCGGTGGACCTCCTCCGGGCGTCGGCGTACGAGCCCGTGCGCGCGCGGTGGGGCCGCGACGCC
GGCGTGCTGGCGGCGTTCCTCATGTCGGGCCTGCTCCACGAGCTCCTCTACCTGTACCTGACGCTGCGGCGGCCCAGGGG
GGAGATGGTGCTCTTCTTCATGCTCCACGGCGTGTCCCAGATCGCCGAGCGCTGGGCCAGGGCGGCCGGGCTGTGGCGGC
CGCCCAAGGTGGCGGCGTACCTCCTCGTCAGCGCCTTCATGGTCGTCACCATATCGGAGCTCTTCTTCGGGCCGTTCATG
AGGGCCGGGGCCGACGTGCGGCTGATGGAGGAGGCCGCGGCGATGCTGCAGTTGATCATGGGCGTCTCGAGGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis