Browse Element(s) Details


Os.33614.1.S1_at

Description gb:AK099838.1
DB_XREF= gi:32985047
TID=Os.33614.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1159_D09.18 (OJ1159_D09.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107C14, full insert sequence.
FL= gb:AK099838.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4620011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46169Os.21387.2.S1_s_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.839.1.S1_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.23683.1.S1_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.35566.1.A1_x_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.21387.3.S1_at10/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.21387.3.S1_x_at9/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.43567.1.S1_x_at8/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.4.S1_x_at6/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.1.S1_x_at4/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.38172.1.S1_x_at4/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.53217.1.S1_x_at3/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.50463.1.S1_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.2.A1_x_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.32238.1.S1_x_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46200Os.33614.1.S1_at11/111+26604924..26611785expressed protein
LOC_Os01g46200Os.53065.1.S1_at11/111+26604924..26611785expressed protein
LOC_Os01g46210OsAffx.2251.1.S1_at11/111+26613289..26614758GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46220OsAffx.9221.1.S1_at11/111+26617082..26619075GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46230NANA1+26620053..26621849pentatricopeptide, putative
LOC_Os01g46240OsAffx.11486.1.S1_s_at11/111+26623542..26625455lipase class 3 family protein, putative, expressed
LOC_Os01g46250OsAffx.23684.1.S1_x_at11/111+26627042..26629765Lipase family protein
LOC_Os01g46260Os.57336.1.S1_at10/111+26633086..26634085expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33614.1.S1_at--219--6073Chr12:7196020..7196456 (25 bp)
GATTAGGAGGAACACCGCAACGTAA
NONE
Os.33614.1.S1_at--861--4111Chr01:26605283..26605307 (25 bp)
CGCAACGTAATCTCCTAGGCTATTA
LOC_Os01g46200
Os.33614.1.S1_at--489--9251Chr01:26605271..26605295 (25 bp)
TCCTAGGCTATTACATCATCTTGAC
LOC_Os01g46200
Os.33614.1.S1_at--843--9592Chr12:10396708..10396732 (25 bp)
TCATCTTGACAATACTCATCATGGT
NONE
Os.33614.1.S1_at--1011--9632Chr12:7196511..7196535 (25 bp)
TCAGGTTGCGATGCTCCAAGAGACT
NONE
Os.33614.1.S1_at--870--5973Chr12:7196530..7196554 (25 bp)
GAGACTTGTATAAACTCAACCATAG
NONE
Os.33614.1.S1_at--772--1112Chr12:7196586..7196610 (25 bp)
AGTGATTCGTAGTTCTGTTCAGATA
NONE
Os.33614.1.S1_at--841--9753Chr12:7196669..7196693 (25 bp)
TAATGATTTCCTTGTAAGACTGCAC
NONE
Os.33614.1.S1_at--1016--6771Chr01:26605019..26605043 (25 bp)
GTTACCGTGTCAAGCATGTACTCTA
LOC_Os01g46200
Os.33614.1.S1_at--953--8753Chr12:7196757..7196781 (25 bp)
TGTAGCACTATTCTGCAGTTGATGC
NONE
Os.33614.1.S1_at--981--6333Chr12:7196777..7196801 (25 bp)
GATGCTATGGTAACCTAGTTGATTC
NONE
Target Sequence 
GATTAGGAGGAACACCGCAACGTAATCTCCTAGGCTATTACATCATCTTGACAATACTCATCATGGTGTTTCAAAACAAG
CATCAGGTTGCGATGCTCCAAGAGACTTGTATAAACTCAACCATAGTACTACAGAAATTTTGTTTACTTTGTGGTATAGT
GATTCGTAGTTCTGTTCAGATAGAAGTGATTCATATTTTTCTTCAAATAGATTACTCATTTAGAAGTTGACTTTTGGGTA
TAATGATTTCCTTGTAAGACTGCACATCAGTTTTAATGTGTTACCGTGTCAAGCATGTACTCTAAGGTGAAGCTTGAGAT
GAGTTTATTGTAGCACTATTCTGCAGTTGATGCTATGGTAACCTAGTTGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis