Browse Element(s) Details


OsAffx.32238.1.S1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=ndhG
TID=OsAffx.32238.1
CNT=1
FEA=DNA_89
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NADH dehydrogenase ND6 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=NADH dehydrogenase ND6
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g461691/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46120Os.14232.1.S1_at11/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120Os.34087.1.S1_x_at3/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120Os.21387.3.S1_x_at1/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46130Os.34087.1.S1_x_at11/111+26557586..26561459expressed protein
LOC_Os01g46130Os.34087.3.S1_at10/111+26557586..26561459expressed protein
LOC_Os01g46130Os.21387.3.S1_x_at3/111+26557586..26561459expressed protein
LOC_Os01g46140Os.34087.2.A1_at11/111+26562616..26565132expressed protein
LOC_Os01g46140Os.34087.2.A1_x_at11/111+26562616..26565132expressed protein
LOC_Os01g46140Os.34087.4.S1_x_at7/111+26562616..26565132expressed protein
LOC_Os01g46140Os.27037.1.A1_at1/111+26562616..26565132expressed protein
LOC_Os01g46140Os.21387.2.S1_s_at1/111+26562616..26565132expressed protein
LOC_Os01g46140Os.35566.1.A1_x_at1/111+26562616..26565132expressed protein
LOC_Os01g46169Os.21387.2.S1_s_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.839.1.S1_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.23683.1.S1_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.35566.1.A1_x_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.21387.3.S1_at10/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.21387.3.S1_x_at9/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.43567.1.S1_x_at8/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.4.S1_x_at6/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.1.S1_x_at4/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.38172.1.S1_x_at4/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.53217.1.S1_x_at3/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.50463.1.S1_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.2.A1_x_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.32238.1.S1_x_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46200Os.33614.1.S1_at11/111+26604924..26611785expressed protein
LOC_Os01g46200Os.53065.1.S1_at11/111+26604924..26611785expressed protein
LOC_Os01g46210OsAffx.2251.1.S1_at11/111+26613289..26614758GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46220OsAffx.9221.1.S1_at11/111+26617082..26619075GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46230NANA1+26620053..26621849pentatricopeptide, putative
LOC_Os01g46240OsAffx.11486.1.S1_s_at11/111+26623542..26625455lipase class 3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32238.1.S1_x_at--191--10296Chr12:11086873..11086897 (25 bp)
TTTCTGCTTTTTCGCTAGGATTAGT
NONE
OsAffx.32238.1.S1_x_at--415--9257Chr12:11086935..11086959 (25 bp)
TCCTACTTTGTAGCTGTGGCACAAC
NONE
OsAffx.32238.1.S1_x_at--292--2298Chr12:11086982..11087006 (25 bp)
AAATGTCTTGATCATATTTGCCGTA
NONE
OsAffx.32238.1.S1_x_at--1130--4216Chr12:11087002..11087026 (25 bp)
CCGTAATGTTCGTAAATGGCTCAGA
NONE
OsAffx.32238.1.S1_x_at--912--8116Chr12:11087050..11087074 (25 bp)
GGACTATTGGAGATGGGTTCACTTC
NONE
OsAffx.32238.1.S1_x_at--1144--10519Chr12:11087067..11087091 (25 bp)
TTCACTTCACTCGTTTGTATAACTA
NONE
OsAffx.32238.1.S1_x_at--39--2537Chr12:11087087..11087111 (25 bp)
AACTATTCCTTTTTCACTAATGACT
NONE
OsAffx.32238.1.S1_x_at--1001--5697Chr12:11087108..11087132 (25 bp)
GACTACTATCCCAGATACGTCATGG
NONE
OsAffx.32238.1.S1_x_at--570--7697Chr12:11087177..11087201 (25 bp)
GGGTCTCATAAATAACGTTCAACAA
NONE
OsAffx.32238.1.S1_x_at--747--7677Chr12:11087205..11087229 (25 bp)
GGGATTCATTTAGCAACCGATTTTT
NONE
OsAffx.32238.1.S1_x_at--330--5478Chr12:11087241..11087265 (25 bp)
GAACTCATTTCCATAATTCTTCTAG
NONE
Target Sequence 
TTTCTGCTTTTTCGCTAGGATTAGTTCTTGTTTGTATATCCTTATTCTATATTTTATTGAATTCCTACTTTGTAGCTGTG
GCACAACTTCTTATTTATGTGGGAGCTATAAATGTCTTGATCATATTTGCCGTAATGTTCGTAAATGGCTCAGAATGGTC
TAAAGATAAGAATTTTTGGACTATTGGAGATGGGTTCACTTCACTCGTTTGTATAACTATTCCTTTTTCACTAATGACTA
CTATCCCAGATACGTCATGGTATGGAATTCTTTGGACTACAAGATCAAACCAAATAGTAGAACAGGGTCTCATAAATAAC
GTTCAACAAATTGGGATTCATTTAGCAACCGATTTTTATCTTCCATTTGAACTCATTTCCATAATTCTTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32238.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis