Browse Element(s) Details


OsAffx.23683.1.S1_at

Description tigr:9629.m04417
TID=OsAffx.23683.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4616911/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46120Os.14232.1.S1_at11/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120Os.34087.1.S1_x_at3/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120Os.21387.3.S1_x_at1/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46130Os.34087.1.S1_x_at11/111+26557586..26561459expressed protein
LOC_Os01g46130Os.34087.3.S1_at10/111+26557586..26561459expressed protein
LOC_Os01g46130Os.21387.3.S1_x_at3/111+26557586..26561459expressed protein
LOC_Os01g46140Os.34087.2.A1_at11/111+26562616..26565132expressed protein
LOC_Os01g46140Os.34087.2.A1_x_at11/111+26562616..26565132expressed protein
LOC_Os01g46140Os.34087.4.S1_x_at7/111+26562616..26565132expressed protein
LOC_Os01g46140Os.27037.1.A1_at1/111+26562616..26565132expressed protein
LOC_Os01g46140Os.21387.2.S1_s_at1/111+26562616..26565132expressed protein
LOC_Os01g46140Os.35566.1.A1_x_at1/111+26562616..26565132expressed protein
LOC_Os01g46169Os.21387.2.S1_s_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.839.1.S1_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.23683.1.S1_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.35566.1.A1_x_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.21387.3.S1_at10/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.21387.3.S1_x_at9/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.43567.1.S1_x_at8/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.4.S1_x_at6/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.1.S1_x_at4/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.38172.1.S1_x_at4/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.53217.1.S1_x_at3/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.50463.1.S1_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.2.A1_x_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.32238.1.S1_x_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46200Os.33614.1.S1_at11/111+26604924..26611785expressed protein
LOC_Os01g46200Os.53065.1.S1_at11/111+26604924..26611785expressed protein
LOC_Os01g46210OsAffx.2251.1.S1_at11/111+26613289..26614758GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46220OsAffx.9221.1.S1_at11/111+26617082..26619075GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46230NANA1+26620053..26621849pentatricopeptide, putative
LOC_Os01g46240OsAffx.11486.1.S1_s_at11/111+26623542..26625455lipase class 3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23683.1.S1_at--295--5031Chr01:26580482..26580506 (25 bp)
GCAGATAACGGCCTCTTGGTGGAAC
LOC_Os01g46169
OsAffx.23683.1.S1_at--5--8411Chr01:26580491..26580515 (25 bp)
GGCCTCTTGGTGGAACTGGCCAGAT
LOC_Os01g46169
OsAffx.23683.1.S1_at--1149--1271Chr01:26580512..26580536 (25 bp)
AGATCTGCTTCACAGCGAAGGGCTC
LOC_Os01g46169
OsAffx.23683.1.S1_at--328--3651Chr01:26580519..26580543 (25 bp)
CTTCACAGCGAAGGGCTCGGCGGTA
LOC_Os01g46169
OsAffx.23683.1.S1_at--466--3391Chr01:26580551..26580575 (25 bp)
CAGCGAGCACCGTGATAGTGGTGTA
LOC_Os01g46169
OsAffx.23683.1.S1_at--141--791Chr01:26580588..26580612 (25 bp)
ATGTGGGTATGTGGCCGAGTTCCAT
LOC_Os01g46169
OsAffx.23683.1.S1_at--961--791Chr01:26580596..26580620 (25 bp)
ATGTGGCCGAGTTCCATGGATTCCC
LOC_Os01g46169
OsAffx.23683.1.S1_at--5--831Chr01:26580611..26580635 (25 bp)
ATGGATTCCCCTCGCAAGACCGGAC
LOC_Os01g46169
OsAffx.23683.1.S1_at--790--6611Chr01:26580713..26580737 (25 bp)
GTTGGAAGACCAGAAGAGCGAGCAT
LOC_Os01g46169
OsAffx.23683.1.S1_at--533--8191Chr01:26580746..26580770 (25 bp)
GGAAGACCATGGCTCCGTCTTCGGC
LOC_Os01g46169
OsAffx.23683.1.S1_at--135--7791Chr01:26581003..26581027 (25 bp)
GGTGCGGCGCGGTGCCAATACATGC
LOC_Os01g46169
Target Sequence 
GCAGATAACGGCCTCTTGGTGGAACTGGCCAGATCTGCTTCACAGCGAAGGGCTCGGCGGTAGAGCGGCCAGCGAGCACC
GTGATAGTGGTGTAGTGGAGGCCACGATGTGGGTATGTGGCCGAGTTCCATGGATTCCCCTCGCAAGACCGGACCAGCGC
CGGCGTCGGTGGTGGCAAGGGAAGAGCGAGCGCGGTGGACGCAGTGGTGGTGTTGACGGGAGCTCAACAGTGTTGGAAGA
CCAGAAGAGCGAGCATGGCGTTGGGGAAGACCATGGCTCCGTCTTCGGCGGGGGCAGCGGTGGAATGTGGCGGCGGCGGC
GGATGGGGACGACCTCGGCTCCAGCCGCAGTCGATGGGGAAGACCGGCTGGGGACGACCTCGGTGGCCAGCGGTGGAGTG
CGCGGTGGCGGCGGTGGCGGCGGAAGGGGTTGTCCTCGGCTCCGGCCGCTGAGGAGCGGCAGATGGGGAAGAAGTAGGAT
CCGGCAGCGGCTGGAGAAGTCGGCTCCGGCGAGGATGCGGCGGTGCGGCGCGGTGCCAATACATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis