Browse Element(s) Details

Os.34087.3.S1_at

Description

gb:AK072891.1
DB_XREF= gi:32982914
TID=Os.34087.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) lipase-like protein (OJ1159_D09.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023147C03, full insert sequence.
FL= gb:AK072891.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g46130	10/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g46090	Os.34087.4.S1_x_at	2/11	1	+	26530063..26533764	GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46100	OsAffx.10637.1.S1_s_at	11/11	1	+	26534821..26538507	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100	OsAffx.10637.3.S1_s_at	11/11	1	+	26534821..26538507	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100	OsAffx.10637.4.S1_s_at	8/11	1	+	26534821..26538507	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100	OsAffx.10637.2.S1_at	1/11	1	+	26534821..26538507	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110	OsAffx.32056.1.S1_x_at	11/11	1	+	26540060..26545092	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110	OsAffx.32056.1.S1_at	11/11	1	+	26540060..26545092	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110	OsAffx.30536.1.S1_x_at	1/11	1	+	26540060..26545092	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110	Os.27834.1.S1_at	1/11	1	+	26540060..26545092	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110	Os.27834.1.S1_x_at	1/11	1	+	26540060..26545092	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46120	Os.14232.1.S1_at	11/11	1	+	26549465..26551967	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120	Os.34087.1.S1_x_at	3/11	1	+	26549465..26551967	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120	Os.21387.3.S1_x_at	1/11	1	+	26549465..26551967	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46130	Os.34087.1.S1_x_at	11/11	1	+	26557586..26561459	expressed protein
LOC_Os01g46130	Os.34087.3.S1_at	10/11	1	+	26557586..26561459	expressed protein
LOC_Os01g46130	Os.21387.3.S1_x_at	3/11	1	+	26557586..26561459	expressed protein
LOC_Os01g46140	Os.34087.2.A1_at	11/11	1	+	26562616..26565132	expressed protein
LOC_Os01g46140	Os.34087.2.A1_x_at	11/11	1	+	26562616..26565132	expressed protein
LOC_Os01g46140	Os.34087.4.S1_x_at	7/11	1	+	26562616..26565132	expressed protein
LOC_Os01g46140	Os.27037.1.A1_at	1/11	1	+	26562616..26565132	expressed protein
LOC_Os01g46140	Os.21387.2.S1_s_at	1/11	1	+	26562616..26565132	expressed protein
LOC_Os01g46140	Os.35566.1.A1_x_at	1/11	1	+	26562616..26565132	expressed protein
LOC_Os01g46169	Os.21387.2.S1_s_at	11/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	OsAffx.839.1.S1_at	11/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	OsAffx.23683.1.S1_at	11/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.35566.1.A1_x_at	11/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.21387.3.S1_at	10/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.21387.3.S1_x_at	9/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.43567.1.S1_x_at	8/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.34087.4.S1_x_at	6/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.34087.1.S1_x_at	4/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.38172.1.S1_x_at	4/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.53217.1.S1_x_at	3/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.50463.1.S1_at	1/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.34087.2.A1_x_at	1/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	OsAffx.32238.1.S1_x_at	1/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.34087.3.S1_at--604--309	1	Chr01:26560865..26560889 (25 bp)	AATACTGTCCATTCCAACATCCGGG	LOC_Os01g46130
Os.34087.3.S1_at--919--793	1	Chr01:26560891..26560915 (25 bp)	GGATATTCGATGAGAACCCGTGAGA	LOC_Os01g46130
Os.34087.3.S1_at--118--143	1	Chr01:26560903..26560927 (25 bp)	AGAACCCGTGAGAAAACTGGATGTA	LOC_Os01g46130
Os.34087.3.S1_at--1078--497	1	Chr01:26560982..26561006 (25 bp)	GCATGAATACGTTCCCACCAAATCT	LOC_Os01g46130
Os.34087.3.S1_at--276--19	1	Chr01:26561065..26561089 (25 bp)	ATTTCATGTATATACCTATCACTAG	LOC_Os01g46130
Os.34087.3.S1_at--746--971	1	Chr01:26561198..26561222 (25 bp)	TCAATTAATCATCGAGATACACAAT	LOC_Os01g46130
Os.34087.3.S1_at--125--319	1	NONE	CAATAATTGATAGTGTGTTTTCTTA	NONE
Os.34087.3.S1_at--943--305	1	Chr01:26561306..26561330 (25 bp)	AATCTGAATGCATTGGTTTCTAAAT	LOC_Os01g46130
Os.34087.3.S1_at--280--135	1	Chr01:26561365..26561389 (25 bp)	AGAGTATTTCATAAACGCACACCAT	LOC_Os01g46130
Os.34087.3.S1_at--460--983	1	Chr01:26561376..26561400 (25 bp)	TAAACGCACACCATGCCACTGCTAA	LOC_Os01g46130
Os.34087.3.S1_at--949--435	1	Chr01:26561391..26561415 (25 bp)	CCACTGCTAAATATATGGTTGGCAT	LOC_Os01g46130

Target Sequence

AATACTGTCCATTCCAACATCCGGGGGGATATTCGATGAGAACCCGTGAGAAAACTGGATGTAAACATTTTCTAAATTCA
TGAAGAAATGTTAATCTAAAATTTGTCTTTTTGTTAAGCATGAATACGTTCCCACCAAATCTACTTTTAATCGAAAATTT
GTCTTTTTGTTCTCAAGAACTTGAGTTTGAACTTGAATATATTTCATGTATATACCTATCACTAGTATTTTTTTTCATTA
ATTTAGAAAACCTTTAGGTTCGGTTTTCACGGGTTTTTACTTATTTGATGGTTTTCATTGGATATTCCCCCCCAACATCC
ATACCATGACATATCAATTAATCATCGAGATACACAATAATTGATAGTGTGTTTTCTTAAAATTAAATTCAATAAAGAGA
CATTTTCAGACATTTTGCTTATCTCCTCATTTTGCACTACAAATCTGAATGCATTGGTTTCTAAATAGACATACTCATGG
GATGAAATCATAAATTATTAAGAGTATTTCATAAACGCACACCATGCCACTGCTAAATATATGGTTGGCAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis