Browse Element(s) Details

OsAffx.839.1.S1_at

Description

gb:NM_192365.1
DB_XREF= gi:34911813
GEN=OJ1159_D09.14
TID=OsAffx.839.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1159_D09.14 (OJ1159_D09.14), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g46169	11/11	GDSL-like Lipase/Acylhydrolase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g46120	Os.14232.1.S1_at	11/11	1	+	26549465..26551967	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120	Os.34087.1.S1_x_at	3/11	1	+	26549465..26551967	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120	Os.21387.3.S1_x_at	1/11	1	+	26549465..26551967	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46130	Os.34087.1.S1_x_at	11/11	1	+	26557586..26561459	expressed protein
LOC_Os01g46130	Os.34087.3.S1_at	10/11	1	+	26557586..26561459	expressed protein
LOC_Os01g46130	Os.21387.3.S1_x_at	3/11	1	+	26557586..26561459	expressed protein
LOC_Os01g46140	Os.34087.2.A1_at	11/11	1	+	26562616..26565132	expressed protein
LOC_Os01g46140	Os.34087.2.A1_x_at	11/11	1	+	26562616..26565132	expressed protein
LOC_Os01g46140	Os.34087.4.S1_x_at	7/11	1	+	26562616..26565132	expressed protein
LOC_Os01g46140	Os.27037.1.A1_at	1/11	1	+	26562616..26565132	expressed protein
LOC_Os01g46140	Os.21387.2.S1_s_at	1/11	1	+	26562616..26565132	expressed protein
LOC_Os01g46140	Os.35566.1.A1_x_at	1/11	1	+	26562616..26565132	expressed protein
LOC_Os01g46169	Os.21387.2.S1_s_at	11/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	OsAffx.839.1.S1_at	11/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	OsAffx.23683.1.S1_at	11/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.35566.1.A1_x_at	11/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.21387.3.S1_at	10/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.21387.3.S1_x_at	9/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.43567.1.S1_x_at	8/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.34087.4.S1_x_at	6/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.34087.1.S1_x_at	4/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.38172.1.S1_x_at	4/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.53217.1.S1_x_at	3/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.50463.1.S1_at	1/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	Os.34087.2.A1_x_at	1/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169	OsAffx.32238.1.S1_x_at	1/11	1	+	26576234..26601032	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46200	Os.33614.1.S1_at	11/11	1	+	26604924..26611785	expressed protein
LOC_Os01g46200	Os.53065.1.S1_at	11/11	1	+	26604924..26611785	expressed protein
LOC_Os01g46210	OsAffx.2251.1.S1_at	11/11	1	+	26613289..26614758	GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46220	OsAffx.9221.1.S1_at	11/11	1	+	26617082..26619075	GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46230	NA	NA	1	+	26620053..26621849	pentatricopeptide, putative
LOC_Os01g46240	OsAffx.11486.1.S1_s_at	11/11	1	+	26623542..26625455	lipase class 3 family protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016298	molecular_function	lipase activity
GO:0016789	molecular_function	carboxylic ester hydrolase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.839.1.S1_at--297--349	1	Chr01:26581479..26581503 (25 bp)	CATGGCCCGACTACTTGTGGGCCGT	LOC_Os01g46169
OsAffx.839.1.S1_at--113--843	1	Chr01:26582469..26582488 (20 bp)	GGCCGGAGCTATGTGGAGGGAAGAA	LOC_Os01g46169
OsAffx.839.1.S1_at--1000--915	1	Chr01:26582505..26582529 (25 bp)	TGCGCGTCGTGATCATCGTCGCTGA	LOC_Os01g46169
OsAffx.839.1.S1_at--531--415	1	Chr01:26582507..26582531 (25 bp)	CGCGTCGTGATCATCGTCGCTGAGG	LOC_Os01g46169
OsAffx.839.1.S1_at--1042--719	1	Chr01:26582510..26582534 (25 bp)	GTCGTGATCATCGTCGCTGAGGGCC	LOC_Os01g46169
OsAffx.839.1.S1_at--219--941	1	Chr01:26582511..26582535 (25 bp)	TCGTGATCATCGTCGCTGAGGGCCG	LOC_Os01g46169
OsAffx.839.1.S1_at--470--643	1	Chr01:26582515..26582539 (25 bp)	GATCATCGTCGCTGAGGGCCGTCGG	LOC_Os01g46169
OsAffx.839.1.S1_at--1091--353	1	Chr01:26582518..26582542 (25 bp)	CATCGTCGCTGAGGGCCGTCGGGTT	LOC_Os01g46169
OsAffx.839.1.S1_at--913--401	1	Chr01:26582534..26582558 (25 bp)	CGTCGGGTTGTCGTTGTGGTCTTCA	LOC_Os01g46169
OsAffx.839.1.S1_at--140--719	2	Chr01:26582535..26582559 (25 bp)	GTCGGGTTGTCGTTGTGGTCTTCAT	LOC_Os01g46169
OsAffx.839.1.S1_at--295--943	2	Chr01:26582536..26582560 (25 bp)	TCGGGTTGTCGTTGTGGTCTTCATC	LOC_Os01g46169

Target Sequence

CATGGCCCGACTACTTGTGGGCCGTGCCTGGGCAGGAGGCGCAGCCCATGGGCTGGCACGGTCCGGCACGAAGTGCCGAT
TGGGCCGTGCCGGCCCGATGGCTGGTGGGCCGTGCCTGGGCCGGGCCGGGCCGGAGCTATGTGGAGGGAAGAAGGGGAAG
CGGCGGCGCTGCGCGTCGTGATCATCGTCGCTGAGGGCCGTCGGGTTGTCGTTGTGGTCTTCATC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis