Browse Element(s) Details


Os.34087.2.A1_at

Description gb:AK063873.1
DB_XREF= gi:32973891
TID=Os.34087.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) lipase-like protein (OJ1159_D09.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-E11, full insert sequence.
FL= gb:AK063873.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4614011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46100OsAffx.10637.1.S1_s_at11/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.3.S1_s_at11/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.4.S1_s_at8/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.2.S1_at1/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.32056.1.S1_x_at11/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.32056.1.S1_at11/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.30536.1.S1_x_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110Os.27834.1.S1_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110Os.27834.1.S1_x_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46120Os.14232.1.S1_at11/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120Os.34087.1.S1_x_at3/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120Os.21387.3.S1_x_at1/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46130Os.34087.1.S1_x_at11/111+26557586..26561459expressed protein
LOC_Os01g46130Os.34087.3.S1_at10/111+26557586..26561459expressed protein
LOC_Os01g46130Os.21387.3.S1_x_at3/111+26557586..26561459expressed protein
LOC_Os01g46140Os.34087.2.A1_at11/111+26562616..26565132expressed protein
LOC_Os01g46140Os.34087.2.A1_x_at11/111+26562616..26565132expressed protein
LOC_Os01g46140Os.34087.4.S1_x_at7/111+26562616..26565132expressed protein
LOC_Os01g46140Os.27037.1.A1_at1/111+26562616..26565132expressed protein
LOC_Os01g46140Os.21387.2.S1_s_at1/111+26562616..26565132expressed protein
LOC_Os01g46140Os.35566.1.A1_x_at1/111+26562616..26565132expressed protein
LOC_Os01g46169Os.21387.2.S1_s_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.839.1.S1_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.23683.1.S1_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.35566.1.A1_x_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.21387.3.S1_at10/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.21387.3.S1_x_at9/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.43567.1.S1_x_at8/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.4.S1_x_at6/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.1.S1_x_at4/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.38172.1.S1_x_at4/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.53217.1.S1_x_at3/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.50463.1.S1_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.2.A1_x_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.32238.1.S1_x_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34087.2.A1_at--35--7491Chr01:26564816..26564840 (25 bp)
GTGGATAAAAGGTTCACGTGAAATT
LOC_Os01g46140
Os.34087.2.A1_at--562--9391Chr01:26564888..26564912 (25 bp)
TCGATCTTGTAAAGGATTAGGTCTA
LOC_Os01g46140
Os.34087.2.A1_at--1056--991Chr01:26564900..26564924 (25 bp)
AGGATTAGGTCTATGACTTCCACCT
LOC_Os01g46140
Os.34087.2.A1_at--702--10411Chr01:26564964..26564988 (25 bp)
TTATATTTTCCATCGTAAGTTGTGT
LOC_Os01g46140
Os.34087.2.A1_at--686--10291Chr01:26564970..26564994 (25 bp)
TTTCCATCGTAAGTTGTGTTTTATT
LOC_Os01g46140
Os.34087.2.A1_at--471--9751Chr01:26565002..26565026 (25 bp)
TAATTTGACATGTACGGTTCATCTT
LOC_Os01g46140
Os.34087.2.A1_at--657--9551Chr01:26565028..26565052 (25 bp)
TCTTTAGTTCTCAATGGCTTAGTTG
LOC_Os01g46140
Os.34087.2.A1_at--209--6731Chr01:26565034..26565058 (25 bp)
GTTCTCAATGGCTTAGTTGAAGACT
LOC_Os01g46140
Os.34087.2.A1_at--177--8991Chr01:26565051..26565075 (25 bp)
TGAAGACTAATCATTCATATATCCC
LOC_Os01g46140
Os.34087.2.A1_at--659--251Chr01:26565069..26565093 (25 bp)
ATATCCCAATAGTTTGTTTGTTTGA
LOC_Os01g46140
Os.34087.2.A1_at--96--8771Chr01:26565083..26565107 (25 bp)
TGTTTGTTTGATTATCTGGGTTGAT
LOC_Os01g46140
Target Sequence 
GTGGATAAAAGGTTCACGTGAAATTGTCAAAATAAGCTGGTATTGTGCTGAAATCGAGTTAAACTTAGGCCNTCGATCTT
GTAAAGGATTAGGTCTATGACTTCCACCTCAAGTGTGCCACCTCCATGAATCAAAGCACTTCATTTTTTTATATTTTCCA
TCGTAAGTTGTGTTTTATTTAGTTAATAATTTGACATGTACGGTTCATCTTGTCTTTAGTTCTCAATGGCTTAGTTGAAG
ACTAATCATTCATATATCCCAATAGTTTGTTTGTTTGATTATCTGGGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34087.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis