Browse Element(s) Details


Os.34087.4.S1_x_at

Description gb:NM_192360.1
DB_XREF= gi:34911803
GEN=OJ1159_D09.9
TID=Os.34087.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34087 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) lipase-like protein (OJ1159_D09.9), mRNA.
PROD=lipase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g461407/11expressed protein
LOC_Os01g461696/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g460902/11GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g460802/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46100OsAffx.10637.1.S1_s_at11/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.3.S1_s_at11/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.4.S1_s_at8/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.2.S1_at1/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.32056.1.S1_x_at11/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.32056.1.S1_at11/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.30536.1.S1_x_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110Os.27834.1.S1_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110Os.27834.1.S1_x_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46120Os.14232.1.S1_at11/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120Os.34087.1.S1_x_at3/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120Os.21387.3.S1_x_at1/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46130Os.34087.1.S1_x_at11/111+26557586..26561459expressed protein
LOC_Os01g46130Os.34087.3.S1_at10/111+26557586..26561459expressed protein
LOC_Os01g46130Os.21387.3.S1_x_at3/111+26557586..26561459expressed protein
LOC_Os01g46140Os.34087.2.A1_at11/111+26562616..26565132expressed protein
LOC_Os01g46140Os.34087.2.A1_x_at11/111+26562616..26565132expressed protein
LOC_Os01g46140Os.34087.4.S1_x_at7/111+26562616..26565132expressed protein
LOC_Os01g46140Os.27037.1.A1_at1/111+26562616..26565132expressed protein
LOC_Os01g46140Os.21387.2.S1_s_at1/111+26562616..26565132expressed protein
LOC_Os01g46140Os.35566.1.A1_x_at1/111+26562616..26565132expressed protein
LOC_Os01g46169Os.21387.2.S1_s_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.839.1.S1_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.23683.1.S1_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.35566.1.A1_x_at11/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.21387.3.S1_at10/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.21387.3.S1_x_at9/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.43567.1.S1_x_at8/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.4.S1_x_at6/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.1.S1_x_at4/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.38172.1.S1_x_at4/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.53217.1.S1_x_at3/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.50463.1.S1_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169Os.34087.2.A1_x_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46169OsAffx.32238.1.S1_x_at1/111+26576234..26601032GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34087.4.S1_x_at--219--10033Chr01:26599072..26599096 (25 bp)
TAGAAAGATTCGCAGCTTCACTCCG
LOC_Os01g46169
Os.34087.4.S1_x_at--246--1232Chr01:26599663..26599687 (25 bp)
AGTTGTTCCTGGTAATCTCCCAATT
LOC_Os01g46169
Os.34087.4.S1_x_at--79--5873Chr01:26599742..26599766 (25 bp)
GAGCCAGAGACAGGTTGCCTCAGGT
LOC_Os01g46169
Os.34087.4.S1_x_at--900--7671Chr01:26562590..26562614 (25 bp)
GGGTTCTCGCAATACCACAACAAAC
NONE
Os.34087.4.S1_x_at--375--8192Chr01:26599827..26599851 (25 bp)
GGAAGCTTCATCCTGATGTGGCCAT
LOC_Os01g46169
Os.34087.4.S1_x_at--414--8452Chr01:26599845..26599869 (25 bp)
TGGCCATCATCTATGCCGATTACTA
LOC_Os01g46169
Os.34087.4.S1_x_at--201--9574Chr01:26562702..26562726 (25 bp)
TCTTCTTTTCCCCTGAACAATTTGG
LOC_Os01g46140
Os.34087.4.S1_x_at--414--8911Chr01:26564516..26564540 (25 bp)
TGAGAATCCTTTGGCAGCTTGCTGT
LOC_Os01g46140
Os.34087.4.S1_x_at--222--8691Chr01:26564602..26564626 (25 bp)
TGTGCGATGACCCTCAACTGTATGG
LOC_Os01g46140
Os.34087.4.S1_x_at--331--5411Chr01:26564652..26564676 (25 bp)
GAAGCTGTGTTTAAGGCCATTGCAA
LOC_Os01g46140
Os.34087.4.S1_x_at--553--7291Chr01:26564717..26564741 (25 bp)
GTGCCCACAAATTACAGAGCTCGGT
LOC_Os01g46140
Target Sequence 
TAGAAAGATTCGCAGCTTCACTCCGAGTGTCATTGCCGAAATTTCTTCCACAATCACTGAATTGATCAGGCTTGGAGCCA
AGACGTTAGTTGTTCCTGGTAATCTCCCAATTGGATGTATTCCATACTATCTCATGATATTCAAGAGTGGTAAGAAGGAA
GATTATGAGCCAGAGACAGGTTGCCTCAGGTGGATGAACGGGTTCTCGCAATACCACAACAAACTTCTTATGGATGAACT
GGAAAATTTACGGAAGCTTCATCCTGATGTGGCCATCATCTATGCCGATTACTATGGAGCTGCTATGGGAATCTTCTTTT
CCCCTGAACAATTTGGAATTGAGAATCCTTTGGCAGCTTGCTGTGGTGGAGGAGGACCTTATGGTGTATCTGAAACTGCA
AGATGTGGACATGGTGAATACAAGGTGTGCGATGACCCTCAACTGTATGGGTCATGGGATGACTATCATCCATCAGAAGC
TGTGTTTAAGGCCATTGCAATTGGCCTGCTACGGGGTTCATACACACAAGCTCCACTCGCGTGCCCACAAATTACAGAGC
TCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34087.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis